JOURNAL OF PLANT PHYSIOLOGY

Unlocking the role of novel primary/di-amine oxidases in crop improvement: Tissue specificity leads to specific roles connected to abiotic stress, hormone responses and sensing nitrogen
Upadhyay RK, Shao J, Maul JE, Schomberg H, Handa AK, Roberts DP and Mattoo AK
Genetic improvements of solanaceous crops for quality and stress responsive traits are needed because of the central role vegetables and fruits have in providing nutrients to human diets. Copper amine oxidase (CuAO) encoding genes involved in metabolism of primary/di-amine nitrogenous compounds, play a role in balancing internal nitrogen (N) pools especially when external N supply fluctuates during growth, development and environmental stresses. In the present study, we investigated the occurrence, molecular evolution and possible role(s) of these unknown genes in tomato crops. Multiple genome-wide bioinformatics approaches led to the identification of eight bona fide CuAO genes (SlCuAO1-SlCuAO8) in the tomato genome with gene numbers like those in Arabidopsis and rice indicating their conserved functional relevance with a tandemly duplicated SlCuAO6-SlCuAO7 pair at chr.9. A conserved intron-exon size and phase distribution for SlCuAO2, 3, 4 pairs are similar to a recently identified single duckweed SpCuAO1 orthologue gene indicating its evolutionary conservation. Synteny analysis showed their closest association to Arabidopsis and but not with rice. Transcriptome data indicated that gene expression for about six genes (SlCuAO1, 2, 3, 4, 6, 7) is root specific, fruit specific for SlCuAO5 and flower specific for SlCuAO8 thus indicating amine oxidation is variable across tissues with a prominance in the root tissue. The majority of CuAO genes are negatively regulated by methyl jasmonate. Positive regulation, however, involves CuAO3/8. Transcript analysis of the ethylene-deficient transgenic lines indicated that ethylene is required for activation of SlCuAO4. CuAO4 and CuAO5 exhibited most significant tissues-independent gene expression responses across various nitrogen regimes. Drought, heat and N stress identified CuAO5 as an overlapping highly expressed gene that corroborates with putrescine accumulation for free and conjugated forms with an opposite abundance of bound forms. Taken together our study highlights new insights into the roles of copper amine oxidation genes and identifies CuAO5 as a multiple stress induced gene that can be used in genetic improvement programs for combining heat, drought and nitrogen use efficiency related traits.
A triplicated wheat-rye chromosome segment including several 12-OXOPHYTODIENOATE REDUCTASE III genes influences magnesium partitioning and impacts wheat performance at low magnesium supply
Gualano LD, Moriconi JI, Gabay G, Tranquilli GE, Pacheco PH, Dubcovsky J and Santa-María GE
We previously reported a structural rearrangement between wheat (Triticum aestivum) and rye (Secale cereale) chromosomes 1BS/1RS that increased the dosage of 12-OXOPHYTODIENOATE REDUCTASE III (OPRIII) genes involved in jasmonate biosynthesis (henceforth, 1RW line), and that drastically reduced primary root growth relative to a control line with the intact 1RS chromosome (henceforth, 1RS). In this study, we show that the increased gene-dosage of this region is associated with increases in the shoot-root partitioning of magnesium (Mg). Moreover, both a CRISPR-edited 1RW line with reduced OPRIII dosage and the 1RW line treated with the jasmonate biosynthesis inhibitor ibuprofen showed reduced differences in shoot-root Mg partitioning than 1RW. The observed differences in Mg partitioning between 1RS and 1RW plants occur over a wide range of external Mg supplies and imply opposite trends of Mg accumulation in roots and shoots. Furthermore, we show an association between the increase of shoot-root Mg partitioning and increased tolerance of the 1RW line to low levels of Mg supply. In summary, our results provide evidence of the role of the jasmonate pathway on the dynamics of Mg accumulation in roots and shoots, which correlates with the performance of wheat plants under conditions of Mg scarcity.
Sink-source driven metabolic acclimation of winter oilseed rape leaves (Brassica napus L.) to drought
Aubert M, Clouet V, Guilbaud F, Berardocco S, Marnet N, Bouchereau A and Dellero Y
The crop cycle of winter oilseed rape (WOSR) incorporates source-to-sink remobilisation during the vegetative stage as a principal factor influencing the ultimate seed yield. These processes are supported by the coordinated activity of the plant's central metabolism. However, climate change-induced drought will affect the metabolic acclimation of WOSR sink/source relationships at this vegetative stage, with consequences that remain to be determined. In this study, we subjected WOSR to severe soil dehydration for 18 days and analysed the physiological and metabolic acclimation of sink and source leaves along the kinetics in combination with measurements of enzymatic activities and transcript levels. Overall, the acclimation of WOSR to drought led to subtle regulations of central metabolism in relation to leaf growth and Pro-induced osmotic adjustment. Notably, sink leaves drastically reduced their growth and transiently accumulated starch. Subsequent starch degradation correlated with the induction of beta-amylases, sucrose transporters, pyrroline-5-carboxylate synthases and proline accumulation. The functioning of the tricarboxylic acid cycle was also altered in sink leaves, as evidenced by variations in citrate, malate and associated enzymatic activities. The metabolic origin of Pro in sink leaves is discussed in relation to Pro accumulation in source leaves and the up-regulation of amino acid permease 1 and glutamine synthetase genes.
Interplay of CDKs and cyclins with glycolytic regulatory enzymes PFK and PK
Lara-Núñez A, Guerrero-Molina ED, Vargas-Cortez T and Vázquez-Ramos JM
In plants, as in all eukaryotes, the cell cycle is regulated by the heterodimer formed by cyclins (Cycs) and cyclin-dependent kinases (CDKs), that phosphorylate serine/threonine residues in target proteins. The extensive involvement of these heterodimers in nuclear cell cycle-related processes has been demonstrated. However, recent findings have linked Cyc-CDK complexes to the regulation of cytosolic processes, including various metabolic pathways, suggesting close coordination between the cell cycle and catabolic/anabolic processes to maintain cellular energy homeostasis. This study extends the analysis of Cyc-CDK complex regulation in maize to two key regulators of glycolysis: phosphofructose kinase (PFK) and pyruvate kinase (PK). Both are cytosolic enzymes, highly regulated positively and negatively by different metabolites, showing a similar activation pattern in their homotetrameric form and low activity when as dimers/monomers. Each enzyme exhibits two putative minimal phosphorylation motives for Cyc-CDKs, conserved in some plant species and in four (PFK) and three (PK) isoforms in maize. This work demonstrates that both enzymes are active with fluctuating levels of activity along maize germination; also, that they associate with different maize Cycs and CDKs as demonstrated by pull-down assays, as well as their in vitro phosphorylation by recombinant CycD;2-CDKA or CycD2;2-CDKB complexes. Additionally, the inhibition of PFK and PK activity following phosphorylation by active Cycs-CDKB complexes obtained by immunoprecipitation from imbibed embryonic axis protein extracts suggests a narrow and negative regulation of glycolysis as the cell cycle progresses. A decreased carbon flow through this pathway is proposed to divert carbon from sugars towards the oxidative pentose phosphate pathway, thereby promoting de novo nucleic acid synthesis precursors to stimulate cell cycle progression.
Exploring genetics and genomics trends to understand the link between secondary metabolic genes and agronomic traits in cereals under stress
Aggarwal PR, Mehanathan M and Choudhary P
The plant metabolome is considered an important interface between the genome and its phenome, where it plays a significant role in regulating plant growth in response to various environmental cues. A wide array of specialized metabolites is produced by plants, which are essential for mediating environmental interactions and their adaptation. Notably, enhanced accumulation of these specialized metabolites, particularly plant secondary metabolites (PSMs), is a part of the chemical defense response that is directly linked to improved stress tolerance. Therefore, exploring the genetic diversity underlying the immense variation of the secondary metabolite pool could unravel the adaptation mechanisms in plants against different environmental stresses. The post-genomic profiling platforms have enabled the exploration of the link between metabolic diversity and important agronomic traits. The current review focuses on the major achievements and future challenges associated with plant secondary metabolite (PSM) research in graminaceous crops using advanced omics approaches. Given this, we briefly summarize different strategies adopted to explore the genetic diversity and evolution of PSMs in cereal crops. Further, we have discussed the recent technological advancements to integrate multi-omics approaches linking the metabolome diversity with the genome, transcriptome, and proteome of these crops under stress. Combining these data with phenomics (the omics of phenotypes) provides a holistic view of how plants respond to stress. Next, we outlined the genetic manipulation studies performed so far in cereals to engineer secondary metabolic pathways for enhanced stress tolerance. In summary, our review provides new insight into developing genetic and genomic trends in exploring the secondary metabolite diversity in graminaceous crops and discusses how this information can be utilized in designing strategies to generate future stress-resilient crops.
Chitosan-thiourea and their derivatives: Applications and action mechanisms for imparting drought tolerance
Ithape D, Dalvi S and Srivastava AK
The increasing abiotic stresses from changing global climatic conditions, including drought, extreme temperatures, salinity, storms, pollutants, and floods, impend crop cultivation and sustainability. To mitigate these effects, numerous synthetic and non-synthetic chemicals or plant growth regulators are in practice. Chitosan, a natural organic substance rich in nitrogen and carbon, and thiourea, a synthetic plant growth regulator containing sulfur and nitrogen, have garnered significant interest for their roles in enhancing plant stress tolerance. Despite extensive use, the precise mechanisms of their actions remain unclear. Towards this endeavor, the present review examines how chitosan and thiourea contribute to stress tolerance in crop plants, particularly under drought conditions, to improve production and sustainability. It also explores thiourea's potential as a hydrogen sulfide (HS) donor and the possible applications of thiolated chitosan derivatives and chitosan-thiourea combinations, emphasizing their biological functions and benefits for sustainable agriculture.
Phlorotannins contribute to the ameliorative bioactivities of Ecklonia maxima-derived bioproduct in salt-stressed Solanumlycopersicum
Omoarelojie LO, Slavětínská LP, Stirk WA, Kulkarni MG and van Staden J
Seaweed-derived bioproducts are increasingly being deployed as an environmentally friendly and sustainable approach to crop management under stressful growth conditions including salinity. The bioactivities of seaweed-derived extracts are linked to the presence of diverse groups of bioactive compounds. In the present study, the phlorotannins present in the seaweed Ecklonia maxima and Kelpak®, an E. maxima-derived bioproduct, were quantified and identified. Three phlorotannins were identified in E. maxima, namely eckol, 2-phloroeckol, and dibenzodioxin-fucodiphloroethol. Eckol (589.11 - 822.54 μg l) and dibenzodioxin-fucodiphloroethol (85 - 895 μg l) were present in Kelpak®. Phlorotannin bioactivity was investigated in tomato seedlings grown under NaCl-induced salinity stress. The seedlings treated with either individual phlorotannins (i.e., eckol or a fraction containing 2-phloroeckol and dibenzodioxin-fucodiphloroethol) or Kelpak® resulted in a reprogramming of biomass allocation as indicated by an increased root-to-shoot ratio. Phlorotannin and Kelpak® treatments induced the accumulation of antioxidants with an attendant augmentation of the antioxidant capacities and inhibition of membrane damage in the NaCl-stressed seedlings. Kelpak® treatment induced an increase in abscisic acid (ABA) accumulation and phlorotannin treatments lowered the ABA content of the stressed seedlings. These results demonstrated that phlorotannins contributed to the ameliorative actions of Kelpak®. The more potent effects of Kelpak®, in comparison to phlorotannins, in improving dry matter accumulation, ABA content, antioxidative properties, and inhibiting tissue injury of the salt-stressed tomato seedlings may be attributed to the presence of other bioactive components in the Kelpak® product.
Involvement of plasma membrane H-ATPase in the nitrate-nutrition uptake and utilization in indica rice
Zhang M, Zhou B, Cheng Y, Zhong C, Yu M, Pan T and Zhu Y
Utilization of nitrogen by crops is essential for sustainable agriculture. The transport of nitrate (NO) across the plasma membrane is a critical gateway for N uptake and subsequent utilization. This process requires proton (H) coupled cotransport, which is driven by proton motive force, provided by plasma membrane (PM) H-ATPase. In this report, two indica rice varieties [Meixiangzhan 2 (MXZ) and Jifengyou 1002 (JFY)] in South China were selected and cultivated in hydroponic solution with 0.5 mM or 2.0 mM NO as the N source. The JFY exhibited stronger growth with higher biomass than MXZ under both 0.5 mM and 2.0 mM NO. PM H-ATPase activity of JFY roots was significantly higher than that of MXZ. The higher PM H-ATPase activity in JFY was consistent with a higher abundance of PM H-ATPase protein and higher transcription levels of OSAs, such as OSA2, OSA7 and OSA8 in roots, OSA3, OSA7 and OSA8 in leaves. The expression of nitrate transporters (OsNRT1;1b, OsNRT2.1, OsNRT2.2, and OsNAR2.1) were also higher in roots or shoots of JFY than those in MXZ. Under 0.5 mM and 2.0 mM NO, the NO absorption and translocation rate, nitrate content, as well as nitrate reductase (NR) activity were all significantly higher in JFY, as compared to those in MXZ. Taken together, in JFY and MXZ, a higher level of PM H-ATPase protein and higher activity coupled with greater efficiency in nitrate uptake, translocation and assimilation, suggesting the existence of a close correlation between PM H-ATPase and nitrate utilization in indica rice. PM H-ATPase may one of the elite genes that can contribute to nitrate use efficiency in rice.
Crosstalk of methylglyoxal and calcium signaling in maize (Zea mays L.) thermotolerance through methylglyoxal-scavenging system
Xiang RH, Wang JQ and Li ZG
Methylglyoxal (MG) and calcium ion (Ca) can increase multiple-stress tolerance including plant thermotolerance. However, whether crosstalk of MG and Ca exists in the formation of maize thermotolerance and underlying mechanism still remain elusive. In this paper, maize seedlings were irrigated with MG and calcium chloride alone or in combination, and then exposed to heat stress (HS). The results manifested that, compared with the survival percentage (SP, 45.3%) of the control seedlings, the SP of MG and Ca alone or in combination was increased to 72.4%, 74.2%, and 83.4% under HS conditions, indicating that Ca and MG alone or in combination could upraise seedling thermotolerance. Also, the MG-upraised SP was separately weakened to 42.2%, 40.3%, 52.1%, and 39.4% by Ca chelator (ethylene glycol tetraacetic acid, EGTA), plasma membrane Ca channel blocker (lanthanum chloride, LaCl), intracellular Ca channel blocker (neomycin, NEC), and calmodulin (CaM) antagonist (trifluoperazine, TFP). However, significant effect of MG scavengers N-acetylcysteine (NAC) and aminoguanidine (AG) on Ca-induced thermotolerance was not observed. Similarly, an endogenous Ca level in seedlings was increased by exogenous MG under non-HS and HS conditions, while exogenous Ca had no significant effect on endogenous MG. These data implied that Ca signaling, at least partly, mediated MG-upraised thermotolerance in maize seedlings. Moreover, the activity and gene expression of glyoxalase system (glyoxalase I, glyoxalase II, and glyoxalase III) and non-glyoxalase system (MG reductase, aldehyde reductase, aldo-keto reductase, and lactate dehydrogenase) were up-regulated to a certain extent by Ca and MG alone in seedlings under non-HS and HS conditions. The up-regulated MG-scavenging system by MG was enhanced by Ca, while impaired by EGTA, LaCl, NEC, or TFP. These data suggest that the crosstalk of MG and Ca signaling in maize thermotolerance through MG-scavenging system. These findings provided a theoretical basis for breeding climate-resilient maize crop and developing smart agriculture.
Tripartite interactions between grapevine, viruses, and arbuscular mycorrhizal fungi provide insights into modulation of oxidative stress responses
Radić T, Vuković R, Gaši E, Kujundžić D, Čarija M, Balestrini R, Sillo F, Gambino G and Hančević K
Arbuscular mycorrhizal fungi (AMF) can be beneficial for plants exposed to abiotic and biotic stressors. Although widely present in agroecosystems, AMF influence on crop responses to virus infection is underexplored, particularly in woody plant species such as grapevine. Here, a two-year greenhouse experiment was set up to test the hypothesis that AMF alleviate virus-induced oxidative stress in grapevine. The 'Merlot' cultivar was infected with three grapevine-associated viruses and subsequently colonized with two AMF inocula, containing one or three species, respectively. Five and fifteen months after AMF inoculation, lipid peroxidation - LPO as an indicator of oxidative stress and indicators of antioxidative response (proline, ascorbate - AsA, superoxide dismutase - SOD, ascorbate- APX and guaiacol peroxidases - GPOD, polyphenol oxidase - PPO, glutathione reductase - GR) were analysed. Expression of genes coding for a stilbene synthase (STS1), an enhanced disease susceptibility (EDS1) and a lipoxygenase (LOX) were determined in the second harvesting. AMF induced reduction of AsA and SOD over both years, which, combined with not AMF-triggered APX and GR, suggests decreased activation of the ascorbate-glutathione cycle. In the mature phase of the AM symbiosis establishment GPOD emerged as an important mechanism for scavenging HO accumulation. These results, together with reduction in STS1 and increase in EDS1 gene expression, suggest more efficient reactive oxygen species scavenging in plants inoculated with AMF. Composition of AMF inocula was important for proline accumulation. Overall, our study improves the knowledge on ubiquitous grapevine-virus-AMF systems in the field, highlighting that established functional AM symbiosis could reduce virus-induced stress.
Adaptive mechanisms of wheat cultivars to lead toxicity through enhanced oxidative defense, ionomic redistribution, and anatomical modifications
Anas M, Bashir MS, Saleem K, Noor A and Quraishi UM
Lead (Pb) contamination is a critical environmental issue that poses a substantial threat to agricultural sustainability and crop productivity, particularly for staple crops like wheat (Triticum aestivum L.). This study investigates the differential physiological, biochemical, and anatomical responses of two wheat cultivars, SKD-1 and Borlaug-16, under Pb stress (100 mg/kg Pb for 21 days). Borlaug-16 displayed a notable tolerance to Pb toxicity, evidenced by a significant increase in total biomass, including a 41.22% rise in shoot turgid weight and a 23.37% increase in root turgid weight, alongside a 57.72% enhancement in root cortex thickness. This cultivar also showed increased antioxidant enzyme activities, such as catalase and peroxidase, and a better ionomic balance, maintaining higher levels of essential minerals like Ca in leaf tissues while effectively accumulating Pb and other trace elements in roots. In contrast, SKD-1 suffered from a more substantial reduction in essential minerals and weaker anatomical and biochemical defenses. The study's novelty lies in providing an integrated approach to understanding wheat cultivar-specific adaptations to Pb stress, suggesting Borlaug-16 as a promising candidate for cultivation in Pb-contaminated soils. These findings underscore the importance of developing Pb-tolerant cultivars to ensure sustainable wheat production in polluted environments.
Alkaline tolerance in plants: The AT1 gene and beyond
Qi Y, Xie Y, Ge M, Shen W, He Y, Zhang X, Qiao F, Xu X and Qiu QS
Salt stress poses a serious challenge to crop production and a significant threat to global food security and ecosystem sustainability. Soil salinization commonly occurs in conjunction with alkalization, which causes combined saline-alkaline stress. Alkaline soil predominantly comprises NaHCO and NaCO and is characterized by a high pH. The combined saline-alkaline stress is more harmful to crop production than neutral salt stress owing to the effects of both elevated salinity and high pH stress. Through genome association analysis of sorghum, a recent study has identified Alkaline tolerance 1 (AT1) as a contributor to alkaline sensitivity in crops. AT1, which is the first gene to be identified as being specifically associated with alkaline tolerance, encodes a G protein γ-subunit (Gγ). Editing of AT1 enhances the yields of sorghum, rice, maize, and millet grown in alkaline soils, indicating that AT1 has potential for generating alkaline-resistant crops. In this review, we summarize the role of AT1 in alkaline tolerance in plants and present a phylogenetic analysis along with a motif comparison of Gγ subunits of monocot and dicot plants across various species.
Developmental-specific regulation promotes the free amino acids accumulation in chlorotic tea plants (Camellia sinensis)
Zhang C, Li Y, Mei P, Gong Y, Liu D, Ye Y, Wen W, Yao M and Ma C
Chlorophyll-deficient tea plant exhibits a significantly higher accumulation of free amino acids (FAAs) than normal tea plants. This study focused on the impact of leaf color and the developmental stage on FAAs in six tea germplasms while maintaining all other conditions. The total FAAs content initially increased as the leaf matured during the one-bud-two-leaves (1B2L) and one-bud-three-leaves (1B3L) stages in green germplasms, then decreased or stabilized in the one-bud-four-leaves (1B4L) stage. In contrast, chlorotic germplasms showed continuous FAAs' content increase from 1B2L to 1B4L, thus being significantly positively correlated with total chlorophyll content. Interestingly, ethylamine content decreased with leaf maturation in both chlorotic and green germplasms, thus showing a significant negative correlation with L-theanine content only in chlorotic germplasms. Comparative RNA-seq analysis linked FAAs accumulation in chlorotic germplasm's 1B3L to photosynthesis inhibition and in 1B4L to nitrogen assimilation promotion. Feeding experiments revealed higher L-theanine synthesis and degradation abilities in chlorotic shoots versus green shoots, with synthesis efficiency exceeding degradation efficiency. Overall, this study uncovers a developmental-specific FAAs accumulation pattern in chlorotic germplasms and offers novel insights into the precise regulation by leaf color and developmental stage.
A simple, cost-effective, and efficient method for screening CRISPR/Cas9 mutants in plants
Wang Y, Ma J, Wu Y, Yang S, Wang P, Zhang H, Li J, Chen L, Kong W, Xia Y, Wang Q and Liu J
The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)-mediated genome editing system is widely used for targeted mutagenesis in a growing number of plant species. To streamline the screening process for mutants, especially those generated from low-efficiency editing events, there is a need for a rapid, cost-effective, and efficient method. Although several screening methods have been developed to process initial samples, these methods often tend to be time-consuming, expensive, or inefficient when dealing with larger sample sizes. Here we describe a simple, rapid, low-cost, and sensitive screening method for screening CRISPR/Cas9 mutants called PCR-Bsl I-associated analysis (PCR-BAA). This method requires only standard PCR and Bsl I restriction enzyme digestion, as well as agarose gel electrophoresis analysis. This method is particularly well suited for the efficient screening of mutants from larger populations of transformants. The simplicity, low cost, and high sensitivity of the PCR-BAA method make it particularly suitable for rapid screening of CRISPR/Cas9-induced mutants, especially those from low-efficiency editing events.
A mycoheterotrophic orchid uses very limited soil inorganic nitrogen in its natural habitat
Zhang W, Qin J, Feng JQ, Dong XM, Hu H and Zhang SB
Mycoheterotrophic plants acquire nitrogen (N) directly from the soil and through their symbiotic fungi. The fungi-derived N has received considerable attention, but the contribution of soil-derived N has been largely overlooked. We investigated how the leafless, rootless, and almost mycoheterotrophic orchid Cymbidium macrorhizon obtains soil N by applying N-labeled ammonium nitrate in its natural habitat, and tracking metabolite accumulation and mycorrhizal fungal association after N application. The decline of N in the rhizome from flowering to fruiting indicated a transfer of N from the rhizome to fruits. At current dose of N application (0.6 g NHNO each plant), only 1.5% of the plant's N was derived from fertilizer, resulting in a low nitrogen use efficiency of 0.27%. The majority of those newly absorbed N (88.89%) was found sank in the rhizome. Amino acids (or their derivatives) and alkaloids were predominant differentially accumulated nitrogenous metabolites after N application, with amino acids occurring in both fruits and the rhizome, and alkaloids primarily in the fruits. The addition of N did not alter the richness of mycorrhizal fungi, but did affect their relative abundance. Our findings suggest that Cymbidium macrorhizon uses very limited soil inorganic nitrogen in its natural habitat, and the root-like rhizome primarily stores N rather than absorbs its inorganic forms, offering new insights into how mycoheterotrophic plants utilize soil N, and the influence of nutrient availability on the orchid-fungi association.
SPOTLIGHT: Orchestrating nitrogen metabolism: Histone modifications and its interplay with the biological clock
Neto DFM and Araújo WL
Effects of LED polarized and vortex light on growth and photosynthetic characteristics of pepper (Capsicum annuum L.)
Gai S, Chen Y, Long Y, Luo Y, Yi X, Zhao Z, Li X and Zhou Z
Most studies currently focus on traditional illuminant regulating plant growth, while less attention has been given to the LED internal luminescence. This study examined how polarized and vortex light affect the growth and photosynthetic traits of pepper plants, with LED light used as the control. The findings indicated that circular polarized light significantly increased the aboveground biomass of pepper. Additionally, both polarized and vortex light treatment significantly influenced the root development of pepper. In comparison to the control group, the chlorophyll content was highest under circular polarized light, while the Pn, Sc, Tr, and Ci values were highest under linear polarized light, and the enzyme activity of Rubisco was increased. Circular polarized light notably increased the activities of POD, CAT, and SOD, the activity of SOD reached its peak under the left vortex light. Moreover, the content of MDA was observed to be the lowest under linear and right vortex light treatments. The expressions of key genes for chlorophyll synthesis (CaHEMA1 and CaCAO) and antioxidant enzyme synthesis (CaPOD, CaSOD, and CaMDHAR) were significantly altered under varying polarized light conditions, The latter genes, which play crucial roles in antioxidant enzyme activity, also showed significant variations in response to different polarized light treatments. In conclusion, polarized light significantly impacts the growth of pepper and is anticipated to be utilized for plant growth, setting the stage for future research in this area.
Molecular simulation reveals that pathogenic mutations in BTB/ANK domains of Arabidopsis thaliana NPR1 circumscribe the EDS1-mediated immune regulation
Raghuraman P and Park S
The NPR1 (nonexpressor of pathogenesis-related genes 1) is a key regulator of the salicylic-acid-mediated immune response caused by pathogens in Arabidopsis thaliana. Mutations C150Y and H334Y in the BTB/ANK domains of NPR1 inhibit the defense response, and transcriptional co-activity with enhanced disease susceptibility 1 (EDS1) has been revealed experimentally. This study examined the conformational changes and reduced NPR1-EDS1 interaction upon mutation using a molecular dynamics simulation. Initially, C150Y and H334Y were categorized as pathological mutations rather than others based on sequence conservation. A distant ortholog was used to map the common residues shared among the wild-type because the mutations were highly conserved. Overall, 179 of 373 residues were determining the secondary structures and fold versatility of conformations. In addition, the mutational hotspots Cys150, Asp152, Glu153, Cys155, His157, Cys160, His334, Arg339 and Lys370 were crucial for oligomer-to-monomer exchange. Subsequently, the atomistic simulations with free energy (MM/PB(GB)SA) calculations predicted structural displacements engaging in the N-termini 133-178 linker connecting the central ANK regions (260-290 and 320-390), where prominent long helices (α5) and short helices (α3) replaced with β-turns and loops disrupting hydrogen bonds and salt bridges in both mutants implicating functional regulation and activation. Furthermore, the mutation repositions the intact stability of multiple regions (C149-N356-W301-E357) compromising a dynamic interaction of NPR1-EDS1. By unveiling the transitions between the distinct functions of mutational perception, this study paves the way for future investigation to orchestrate additive host-adapted transcriptional reprogramming that controls defense-related regulatory mechanisms of NPR1s in plants.
KAR-dormancy release in Avena fatua caryopses includes increased AfMAN gene expression and ENDO-β-MANNANASE activity in the coleorhiza and radicle
Orłowska A and Kępczyński J
KAR, at very low concentration (3x10 M) released dormancy in Avena fatua caryopses, which was expressed in almost complete emergence of coleorhiza (CE) and radicle (RE) just after three days of germination. The dormancy-releasing effect of KAR was associated with an increased activity of ENDO-β-MANNANASE (MAN; EC 3.2.1.78) (hydrolase and transglycosylase) in coleorhiza and radicle before RE. The MAN genes, MAN1, MAN2, MAN3, MAN4, and MAN5 were for the first time identified in the genome of A. fatua. KAR induced expression of AfMAN1-3 and AfMAN5 in the coleorhiza and AfMAN2 and AfMAN3 in the radicle during caryopses germination. The increase in transcripts in the coleorhiza of AfMAN1,5 after 8 h and AfMAN3,5 after 12 h germination in the presence of KAR is probably responsible for the increase in MAN activity determined after 18 h before RE. KAR also increased AfMAN3 expression in radicle after 12 h which probably caused the increased MAN activity after 18 h. Therefore, release of caryopses dormancy by KAR involves increasing expression of MAN genes and MAN activity both in the coleorhiza and radicle, which might facilitate the passage of the radicle through the coleorhiza. The work provides the first data on the contribution of MAN, present in coleorhiza and radicle, in the dormancy release of caryopses by KAR.
Inducible tolerance to low Ca:Mg in serpentine ecotype of Erythranthe guttata
Palm E, Guidi Nissim W, Colasurdo G and Van Volkenburgh E
In serpentine soils, the low level of calcium relative to magnesium (Ca:Mg) is detrimental to the growth of most plant species. Ecotypic variation in Erythranthe guttata allows for some populations to maintain high photosynthetic rates and biomass despite low Ca:Mg. In this study, the mechanism of tolerance was investigated by treating hydroponically grown plants with either high (1.0) or low (0.02) Ca:Mg growth solutions and assaying excised leaf discs for rates of photosynthesis and disc expansion, and for starch, Ca and Mg ion concentrations. Low Ca:Mg in the assay solutions reduced both photosynthesis and leaf disc expansion after one week of treatment. However, serpentine tissues show stable photosynthetic rates after one week and a recovery in leaf tissue expansion after two weeks exposure to low Ca:Mg conditions. Values for non-serpentine tissues continued to decline. Increased growth of low Ca:Mg treated discs supplied with exogenous sucrose suggests that growth in serpentine-exposed tissues is limited by availability of carbon products from photosynthesis. Serpentine leaves had higher vacuole Mg concentrations than non-serpentine leaves after three weeks of treatment with low Ca:Mg. The combination of elevated starch concentrations, reduced growth and lower vacuolar Mg concentrations in leaves of non-serpentine plants grown in low Ca:Mg indicate an inefficient use of carbon resources and starch degradation as an observed response to Mg toxicity. Together, these results suggest that serpentine E. guttata exhibits an inducible tolerance to low Ca:Mg through gradual compartmentalization of magnesium to maintain the production and metabolism of photosynthates necessary for growth.
Changes in the anthocyanin pathway related to phenolic compounds and gene expression in skin and pulp of cv. 'Istrska belica' (Olea europaea L.) during ripening
Burin T, Grohar MC, Jakopic J, Veberic R, Stajner N, Cesar T, Kunej U and Hudina M
The purpose of research was to study in detail the dynamics of the anthocyanin pathway during the ripening of olives, comprising the relative gene expression of nine enzymes and the contents of twelve phenolic compounds. The analyses were conducted on cv. 'Istrska belica' at seven maturity stages, separately in the pulp and the skin. Most phenolic compounds showed a higher content in the skin than in the pulp. Results showed that the accumulation of dihidroquercetin and dihydromyricetin started at the latest maturity stages. The most abundant phenolics evaluated in the current study present in both tissues were cyanidin-3-O-rutinoside and delphinidin-3-O-glucoside, both presented at all maturity stages, even when colour was not yet visible in the skin or pulp. Gene expression of enzymes revealed tissue-specific regulation during ripening. Genes expressions for phenylalanine ammonia lyase, chalcone synthase, chalcone isomerase, flavonoid 3-hydroxylase and flavonoid 3'-hydroxylase showed higher levels in the skin than in the pulp, and an upregulation during ripening in both tissues. Anthocyanidin synthase was the only gene with the highest expression at the beginning of ripening, with extreme decrease between second and third maturity stage, which suggests that the enzyme is mainly synthesized at the beginning of ripening and that enzyme activation starts at latest maturity stages. Our research contributes to a better understanding of the dynamics of phenolic accumulation and the relative gene expression of enzymes involved in the anthocyanin pathway in reveals tissue-specific changes during olive fruit ripening. The previous results are also supported by physical changes, which are reflected in a statistical increase in fruit weight, a decrease in fruit firmness and also by changes in appearance observed during ripening. Understanding the accumulation of anthocyanins could, through further study, help to improve the quality of the fruit and therefore the quality of olive products.