Epidemiological Survey of Canine Distemper Virus Infection: Exploring the Link Between Virus Spread and Invasive Raccoon (Procyon lotor) Population Growth in Hokkaido, Japan
Invasive raccoons (Procyon lotor) naturalized in Hokkaido, Japan, potentially spreading infectious diseases. Canine distemper virus infection is a serious epizootic disease, for which the raccoon is one of the hosts. We investigated the virus's prevalence in Hokkaido's wild raccoons, using 611 serum samples collected from captured raccoons in 2007-2012, 2021, and 2022. Higher seropositivity rates were confirmed in 2007 (32.7%), 2021 (46.4%), and 2022 (46.8%) than in 2008-2012 (0.00%-6.06%), suggesting the occurrence of an epidemic in 2007, 2021, and 2022 and its disappearance in 2008-2012. However, the infection status has recently changed, with high seropositivity rates consecutively confirmed in 2021 and 2022. Logistic regression analysis was performed to investigate the relationships among the catch per unit effort (an index of animal population density), host and environmental factors, and antibody status. The catch per unit effort correlated with seropositivity in 2007. As for environmental factors, the forest area ratio had a weak influence on seroprevalence in 2007; however, the residential area ratio had a clear influence on seroprevalence in 2021 and 2022. The epidemic occurred in forested areas in 2007; nonetheless, recent raccoon population growth and habitat expansion may have caused widespread infections even around residential areas in 2021 and 2022. Continuous monitoring of the infection and reinforcement of raccoon control programs are necessary to avoid serious damage through disease transmission to sympatric native raccoon dog (Nyctereutes procyonoides) and fox (Vulpes vulpes) populations, as well as health consequences for domestic dogs (Canis familiaris).
Synergistic Effects of Three-Species Symbiosis in Spiders
A schematic illustration depicts the symbiotic relationships between arthropod predators, featuring a Cyrtophora host and its two guests: the orb-weaving Leucauge and the kleptoparasitic Argyrodes (Photo: Po Peng).
The Impact of Life-History Traits on Vulnerability to Extinction of the Oviparous Species in Reptiles
A species' vulnerability to extinction is influenced by both extrinsic threats (e.g., habitat loss and invasive species) and intrinsic biological traits (such as life-history traits, reproductive mode, and reproductive output). In this study, we investigated the roles of intrinsic biological traits in determining the risk of extinction across 960 oviparous species of non-avian reptiles. Our findings revealed that vulnerability to extinction is negatively correlated with clutch size, but positively correlated with egg size when controlling for body size. Surprisingly, we found that body size alone is not a predictor of extinction risk. Additionally, we observed a nonsignificant relationship between the activity phase and vulnerability to extinction across oviparous species. These results suggest that the increased risk of endangerment in oviparous reptiles may stem from declining population density due to decreasing clutch size and increasing egg mass.
Chromosome-level genome of diamondback terrapin provides insight into the genetic basis of salinity adaptation
Diamondback terrapins (Malaclemys terrapin centrata) exhibit strong environmental adaptability and live in both freshwater and saltwater. However, the genetic basis of this adaptability has not been the focus of research. In this study, we successfully constructed a ∼2.21-Gb chromosome-level genome assembly for M. t. centrata using high-coverage and high-depth genomic sequencing data generated on multiple platforms. The M. t. centrata genome contains 25 chromosomes and the scaffold N50 of ∼143.75 Mb, demonstrating high continuity and accuracy. In total, 53.82% of the genome assembly was composed of repetitive sequences, and 22 435 protein-coding genes were predicted. Our phylogenetic analysis indicated that M. t. centrata was closely related to the red-eared slider turtle (Trachemys scripta elegans), with divergence approximately ∼23.6 million years ago (Mya) during the early Neogene period of the Cenozoic era. The population size of M. t. centrata decreased significantly over the past ∼14 Mya during the Cenozoic era. Comparative genomic analysis indicated that 36 gene families related to ion transport were expanded and several genes (AQP3, solute carrier subfamily, and potassium channel genes) underwent specific amino acid site mutations in the M. t. centrata genome. Changes to these ion transport-related genes may have contributed to the remarkable salinity adaptability of diamondback terrapin. The results of this study not only provide a high-quality reference genome for M. t. centrata but also elucidate the possible genetic basis for salinity adaptation in this species.
Comparative analysis of chromosome-level genomes provides insights into chromosomal evolution in Chiroptera
Chiroptera (bats) presents a fascinating model due to its remarkable variation in chromosome numbers, which range from 14 to 62. This astonishing diversity makes bats an excellent subject for studying chromosome evolution. The black-bearded tomb bat (Taphozous melanopogon) occupies a pivotal phylogenetic position within Chiroptera, emphasizing its crucial role in the systematic examination of bat chromosome evolution. In this study, we present the first chromosome-level genome of T. melanopogon within the family Emballonuridae. Together with previously published genomes, we construct a strongly supported phylogenetic tree of bats, which supports that Emballonuridae forms a basal group within Yangochiroptera. Furthermore, we reconstruct ancestral karyotypes at key nodes along the bat phylogeny and conduct a synteny analysis among the genomes of 12 bat species. Our findings identified evolutionary breakpoint regions (EBRs) that are of particular interest. Notably, some bat genomes exhibit an enrichment of genes related to host defense against microbial pathogens within EBRs. Remarkably, one species possesses multiple copies of some β-defensin genes, while six other species have experienced the loss of some β-defensin genes due to EBRs. Furthermore, some olfactory receptor genes are located in EBRs of 12 species, 4 of which have a significant enrichment in sensory perception of smell. Together, our comparative genomic analysis underscores the potential link between chromosome rearrangements and the adaptation of bats to defend against microbial pathogens.
Impact of delayed seed drop on rodent-mediated seed dispersal and predation of pine
Many plants exhibit a canopy seed bank, where seeds persist within the canopy for prolonged periods, gradually descending over time and potentially influencing seed predation and animal-mediated dispersal. However, the impact of delayed seed drop on animal predation and seed dispersal remains unclear. We used Chinese Armand pine seeds to simulate delayed seed drop of the canopy seed bank by releasing 7800 pine seeds in both winter and the following summer over 2 years, tracking their fates to investigate its effect on seed predation and dispersal by rodents in a pine plantation in southwest China. Results showed significant seasonal differences in seed fate. In summer, seeds experienced higher predation rates (62.08% vs 3.80% in winter) and lower scatter-hoarding rates (4.18% vs 15.40% in winter). Additionally, seeds in summer were dispersed farther (4.20 m vs. 3.56 m in winter) and primarily formed single-seed caches, as opposed to multi-seed caches in winter. Although delayed seed drop increased immediate predation risks, favorable summer conditions allowed for rapid germination, reducing long-term exposure to predation. In conclusion, while delayed seed drop increases immediate predation risks and reduces caching, it concurrently enhances dispersal distances and reduces cache size.
Adaptive divergence in reproductive seasonality and underlying physiological features fit Rattus norvegicus to live as opportunistic breeders
How organisms respond to complex environments is one of the unsolved problems in ecology. Life history patterns of a species provide essential information on how different populations may respond and adapt to environmental changes. Compared to typical seasonal breeders, which have limited distributions, the worldwide distribution of brown rats (Rattus norvegicus) across highly complex and divergent habitats suggests they exhibit exceptional adaptiveness. However, the difference in physiological mechanisms by which brown rats respond and adapt to markedly different environments is seldom investigated. Here, we reveal a significant divergence in reproductive seasonality and environmental responses between two brown rat subspecies: one subspecies, R. n. caraco, lives in the temperate zone, and another subspecies, R. n. norvegicus, lives in the subtropical region. Although R. n. caraco displayed a significantly higher reproductive seasonality than R. n. norvegicus, both subspecies adapted to sub-optimal breeding conditions mainly by regulating the seminal vesicle rather than testis development. Especially in responding to severe winter conditions in high-latitude regions, bodyweight-dependent recovery of testicular development in adults enables R. n. caraco to initiate reproduction more rapidly when conditions are suited. These findings elucidate a regulatory process of how brown rats live as opportunistic breeders by benefiting from enhanced semen production.
Exploring riverine aquatic animal diversity and establishing aquatic ecological monitoring approaches tailored to the Qinling region via eDNA technology
This study thoroughly examines biodiversity and aquatic ecosystems across 14 sampled sites within the Shitou River basin by utilizing environmental DNA technology. Through integrated analysis and high-throughput sequencing, the study elucidates a diverse array of biodiversity, encompassing 27 fish species and 341 freshwater benthic macroinvertebrates (FBM) species. Using various biodiversity indices, we found significant differences in diversity and stability across different environments. Regions with more complex habitats had higher species richness and evenness. Further analyses showed complex relationships between diversity metrics for FBM and fish, indicating potential interactions between these groups. The standardized mean score (SMS) was developed to aid in the assessment of water quality. Specifically, SMS scoring revealed that sites STH3, STH4, and STH14 excelled across multiple dimensions, earning an "Excellent" rating, while site STH12 was rated as "Poor" due to subpar performance across several metrics. This project not only enhances current understanding regarding aquatic ecological dynamics but also establishes a strong foundation for detailed environmental evaluation and monitoring, aligned with the priorities of contemporary ecological management and caution.
Unlocking agro-ecosystem sustainability: exploring the bottom-up effects of microbes, plants, and insect herbivores
Agricultural ecosystem formation and evolution depend on interactions and communication between multiple organisms. Within this context, communication occurs between microbes, plants, and insects, often involving the release and perception of a wide range of chemical cues. Unraveling how this information is coded and interpreted is critical to expanding our understanding of how agricultural ecosystems function in terms of competition and cooperation. Investigations examining dual interactions (e.g. plant-microbe, insect-microbe, and insect-plant) have resolved some basic components of this communication. However, there is a need for systematically examining multitrophic interactions that occur simultaneously between microorganisms, insects, and plants. A more thorough understanding of these multitrophic interactions has been made possible by recent advancements in the study of such ecological interactions, which are based on a variety of contemporary technologies such as artificial intelligence sensors, multi-omics, metabarcoding, and others. Frequently, these developments have led to the discovery of startling examples of each member manipulating the other. Here, we review recent advances in the understanding of bottom-up chemical communication between microorganisms, plants, and insects, and their consequences. We discuss the components of these "chemo-languages" and how they modify outcomes of multi-species interactions across trophic levels. Further, we suggest prospects for translating the current basic understanding of multitrophic interactions into strategies that could be applied in agricultural ecosystems to increase food safety and security.
Sympatric diversity pattern driven by the secondary contact of two deeply divergent lineages of the soybean pod borer Leguminivora glycinivorella
The soybean pod borer, Leguminivora glycinivorella (Matsumura), is an important tortricid pest species widely distributed in most parts of China and its adjacent regions. Here, we analyzed the genetic diversity and population differentiation of L. glycinivorella using diverse genetic information including the standard cox1 barcode sequences, mitochondrial genomes (mitogenomes), and single-nucleotide polymorphisms (SNPs) from genotyping-by-sequencing. Based on a comprehensive sampling (including adults or larvae of L. glycinivorella newly collected at 22 of the total 30 localities examined) that covers most of the known distribution range of this pest, analyses of 543 cox1 barcode sequences and 60 mitogenomes revealed that the traditionally recognized and widely distributed L. glycinivorella contains two sympatric and widely distributed genetic lineages (A and B) that were estimated to have diverged ∼1.14 million years ago during the middle Pleistocene. Moreover, low but statistically significant correlations were recognized between genetic differentiation and geographic or environmental distances, indicating the existence of local adaptation to some extent. Based on SNPs, phylogenetic inference, principal component analysis, fixation index, and admixture analysis all confirm the two divergent sympatric lineages. Compared with the stable demographic history of Lineage B, the expansion of Lineage A had possibly made the secondary contact of the two lineages probable, and this process may be driven by the climate fluctuation during the late Pleistocene as revealed by ecological niche modeling.
cba-miR-222-3p involved in photoperiod-induced apoptosis in testes of striped hamsters by targeting TRAF7
The role of miRNAs in the regulation of seasonal reproduction in rodents, particularly in relation to photoperiod changes, is still poorly understood. Previous studies on miRNA transcriptomes of striped hamster (Cricetulus barabensis) testes have indicated that the photoperiodism of testes, especially apoptosis, may be influenced by miRNAs. As a functional miRNA, cba-miR-222-3p in striped hamster testes exhibits suppression under a short photoperiod. To elucidate the potential role of testicular cba-miR-222-3p in the seasonal reproduction of striped hamsters, we exposed male striped hamsters to different photoperiods or injected miRNA agomir into the testes and observed the effects of these treatments, particularly some indicators related to apoptosis. The results showed that the levels of apoptosis in the testes increased in short daylength, accompanied by a significant decrease in cba-miR-222-3p expression and an increase in TRAF7 expression. Dual luciferase reporter assays verified the targeting relationship between cba-miR-222-3p and TRAF7 predicted by bioinformatics. In addition, the expression of TRAF7 decreased in the testes, which injected miRNA agomir, leading to inhibition of apoptosis, and the expression of key genes (MEKK3, p38, p53) in the downstream MAPK signaling pathway of TRAF7 was suppressed. These results suggest that short daylength induces testicular apoptosis in striped hamsters, and one possible mechanism is that the decreased expression of miR-222-3p in testes reduces the repression of TRAF7 translation, thereby activating the MAPK pathway and affecting the level of testicular apoptosis. These findings reveal the potential role of miR-222-3p in animal reproduction and provide new insights into the regulation of rodent populations.
Museum specimens shedding light on the evolutionary history and cryptic diversity of the hedgehog family Erinaceidae
The family Erinaceidae encompasses 27 extant species in two subfamilies: Erinaceinae, which includes spiny hedgehogs, and Galericinae, which comprises silky-furred gymnures and moonrats. Although they are commonly recognized by the general public, their phylogenetic history remains incompletely understood, and several species have never been included in any molecular analyses. Additionally, previous research suggested that the species diversity of Erinaceidae might be underestimated. In this study, we sequenced the mitochondrial genomes of 29 individuals representing 18 erinaceid species using 18 freshly collected tissue and 11 historical museum specimens. We also integrated previously published data for a concatenated analysis. We aimed to elucidate the evolutionary relationships within Erinaceidae, estimate divergence times, and uncover potential underestimated species diversity. Our data finely resolved intergeneric and interspecific relationships and presented the first molecular evidence for the phylogenetic position of Mesechinus wangi, Paraechinus micropus, and P. nudiventris. Our results revealed a sister relationship between Neotetracus and Neohylomys gymnures, as well as a sister relationship between Hemiechinus and Mesechinus, supporting previous hypotheses. Additionally, our findings provided a novel phylogenetic position for Paraechinus aethiopicus, placing it in a basal position within the genus. Furthermore, our study uncovered cryptic species diversity within Hylomys suillus as well as in Neotetracus sinensis, Atelerix albiventris, P. aethiopicus, and Hemiechinus auratus, most of which have been previously overlooked.
Adaptation of skin structures to environmental variations in anurans from southern and southwestern China
Variations in skin structures can possibly reflect local adaptation to distinct environmental factors. As the primary interface with the surrounding environment, amphibian skin undergoes phenotypic innovations that play a key role in protection, water absorption, and respiration. However, the effects of environmental factors on skin structures have been examined in only a limited number of species. Here, we conducted a comparative analysis of the skin structures of 102 Chinese anuran species across varying geographical distributions and habitat types. Our results revealed that the total volume of granular glands and capillary density in the dorsal skin significantly increased with increasing latitude. We also found that the thickness of calcified layers in both dorsal and ventral skin was positively correlated with annual temperature and negatively correlated with humidity. Additionally, terrestrial species exhibited the largest dorsal granular gland, whereas arboreal species had the smallest one. Likewise, the largest dorsal mucous gland was observed in aquatic species, while the smallest was found in terrestrial species. These results highlighted the importance of understanding the relationship between skin phenotypes and environmental variables and thus providing conservation strategies based on the evolutionary adaptations in anurans. Our study can contribute to the broader knowledge of evolutionary biology in anurans by demonstrating how specific skin traits are linked to survival and fitness across various ecological contexts.
Constitutive innate immune defenses in relation to urbanization and population density in an urban bird, the feral pigeon Columba livia domestica
Urbanization processes modulate the immunological challenges faced by animals. Urban habitat transformations reshape pathogen diversity and abundance, while high population density-common in urban exploiter species-promotes disease transmission. Responses to urbanization may include adaptive adjustments of constitutive innate immune defenses (e.g. complement system and natural antibodies [NAbs]), which serve as first-line protection against infections. Here, we investigated associations of habitat urbanization and host population density with complement and NAbs in an urban bird, the feral pigeon Columba livia domestica. To do so, we employed the hemolysis-hemagglutination assay to analyze nearly 200 plasma samples collected across urbanization and pigeon population density gradients in five major cities in Poland. We found a negative association between urbanization score and hemagglutination (i.e. NAbs activity), but not hemolysis (i.e. complement activity), indicating either immunosuppression or adaptive downregulation of this immune defense in highly transformed urban landscape. Population density was not significantly related to either immune parameter, providing no evidence for density-dependent modulation of immune defenses. At the same time, there was a negative association of hemolysis with condition (scaled mass index), suggesting resource allocation trade-offs or contrasting effects of the urban environment on immune defenses and body condition. The results demonstrate that habitat structure can be an important factor shaping the immune defenses of the feral pigeon, although these associations were not mediated by variation in population density. Our study highlights the complexity of the links between immune defenses in wildlife and urbanization and reinforces the need for comprehensive ecoimmunological studies on urban animals.
Early positive tactile stimulation reverses the increase of anxiety and decrease of sociality induced by early chronic mechanical pain in mandarin voles
Animals may experience early negative (mechanical pain: being retrieved using an incisor by parents or attacked) or positive stimulation (being licked and groomed) that may affect emotional and social behaviors in adulthood. Whether positive tactile stimulation can reverse adverse consequences on emotional and social behaviors in adulthood resulting from chronic mechanical pain and underlying mechanisms remain unclear. This study used a tail-pinching model during development to simulate mechanical pain experienced by pups in high-social mandarin voles (Microtus mandarinus). Subsequently, brush-like positive tactile stimuli were applied to the backs of the mandarin voles. Various behavioral tests were used to measure levels of anxiety, depression, and sociability. The results showed that early tail-pinching delayed the eye opening of pups, increased levels of anxiety, reduced levels of sociality in male mandarin voles, and impaired social cognition in females during adulthood. Brushing on the back reversed some of these effects. While mandarin voles that were exposed to tail-pinching during development were exposed to sub-threshold variable stress as adults, they were more likely to show a stress-induced increase of anxiety-like behavior, reduction of sociability, and impairment of social cognition, displaying heightened susceptibility to stress, particularly in males. However, back-brushing reversed some of these effects, implying that these adults display enhanced stress resilience. In addition, tail-pinching reduced levels of serum oxytocin and increased corticosterone levels in serum, but back-brushing reversed these effects. Overall, it was found that positive tactile stimulation reversed increases in anxiety and impairments of social behavior induced by negative stimulation in male mandarin voles via alteration of oxytocin and corticosterone levels.
The urban island: climatic suitability of Linepithema humile (Hymenoptera: Formicidae) and the role of cities in the invasion of the Western Palearctic
Urban environments often present environmental conditions that facilitate the introduction and establishment of nonnative and invasive species. These can expand their range into areas with unfavorable climates by taking advantage of the ecological and climatic homogenization of cities, bypassing the ecological barriers presented by the surrounding environment. One way to monitor the expansion of these species is using potential distribution models. We used as a model species the Argentine ant, Linepithema humile (Hymenoptera: Formicidae) whose invasion has caused serious consequences for biodiversity and economic losses worldwide. We used the average result of six different algorithms and used climatic variables and population density as a proxy for the urbanization level in the Western Palearctic to build the predictive model. The model indicates this ant prefers to inhabit areas with Mediterranean and Temperate Oceanic climates and that its suitability depends on two main factors: the continentality (temperature annual range) and the degree of urbanization. The species is predicted to be absent in areas with large temperature contrasts throughout the year, particularly in rural and peri-urban areas (i.e. adjacent to urban areas) of inland regions. Conversely, the species has a predilection for coastal and urban areas where environmental conditions are attenuated by the influence of the sea or the "urban heat island" effect in the case of inland cities. In this sense, cities act as "bioclimatic islands" facilitating the establishment of the Argentine ant as a reservoir, enlarging its distribution into climatically nonoptimal areas, and promoting its future expansion in a scenario of global warming and socioeconomic change.
Bold rats (Niviventer confucianus) are more effective in seed dispersal: evidence both under enclosure conditions and in the field
Rodents are important seed dispersers of plants because they move seeds far away from the parent trees and hoard seeds in the soil, benefiting seed dispersal and regeneration. Traits of plant seeds and animals are associated with rodent-mediated seed dispersal, but animal personality, the consistent individual behavioral differences in time and environments, has not been fully considered. Here, we first measured the personality of 26 Niviventer confucianus in the laboratory, and 10 individuals in the field of one population, and then tested their behavior of seed consumption and hoarding both in semi-natural enclosures and the field. We tested the hypothesis that individuals with different personalities have different preferences for seed consumption and hoarding, which has different implications for seed dispersal and regeneration. Under the enclosure conditions, all parameters of personality are repeatable; bold individuals harvested fewer seeds but scatter-hoarded more seeds and dispersed farther than timid ones, whereas active individuals consumed more seeds, but left fewer seeds on the ground surface than inactive ones. In the field, boldness, activity, and exploration of the animals are repeatable; bold individuals scatter-hoarded more seeds to farther distances than timid ones, whereas active individuals harvested and consumed more seeds than inactive ones. These results suggest that bold rats tended to scatter hoard seeds and disperse them to a longer distance, implying they are more effective in seed dispersal. In the future, animal personality (e.g. boldness and activity) should be considered in seed dispersal studies and ecological-based manipulation in seed dispersal and regeneration of forests.
Deep learning detects subtle facial expressions in a multilevel society primate
Facial expressions in nonhuman primates are complex processes involving psychological, emotional, and physiological factors, and may use subtle signals to communicate significant information. However, uncertainty surrounds the functional significance of subtle facial expressions in animals. Using artificial intelligence (AI), this study found that nonhuman primates exhibit subtle facial expressions that are undetectable by human observers. We focused on the golden snub-nosed monkeys (Rhinopithecus roxellana), a primate species with a multilevel society. We collected 3427 front-facing images of monkeys from 275 video clips captured in both wild and laboratory settings. Three deep learning models, EfficientNet, RepMLP, and Tokens-To-Token ViT, were utilized for AI recognition. To compare the accuracy of human performance, two groups were recruited: one with prior animal observation experience and one without any such experience. The results showed human observers to correctly detect facial expressions (32.1% for inexperienced humans and 45.0% for experienced humans on average with a chance level of 33%). In contrast, the AI deep learning models achieved significantly higher accuracy rates. The best-performing model achieved an accuracy of 94.5%. Our results provide evidence that golden snub-nosed monkeys exhibit subtle facial expressions. The results further our understanding of animal facial expressions and also how such modes of communication may contribute to the origin of complex primate social systems.
Climate factors and food availability shape the altitudinal migration of birds in the Xiling Snow Mountains, China
Many bird species in montane regions display altitudinal migration, but so far, the underlying ecological driving mechanisms are not clear. We studied the altitudinal migration behavior patterns and factors influencing altitudinal migration in the Xiling Snow Mountains, which are part of the Hengduan mountain range in southwest China. We recorded the local bird diversity, the seasonal change of: the average temperature (AT), the average humidity (AH), the average invertebrate biomass (AIB), and the amount of plant food sources (PFS) at two study sites (∼1300 and ∼2100 m a.s.l.) during two migration seasons from September 2022 to May 2023. During our surveys, we recorded 96 bird species in total. Among these, 15 altitudinal migrants were identified. The most common family among altitudinal migrants was Leiothrichidae. AT, AIB, and PFS had a significant positive correlation with the monthly number of individuals (MNI) several bird species, implying that increasing temperatures and an increasing abundance of invertebrates and PFS possibly induced upward migration of altitudinal migrants and vice versa. AH possibly only played a minor role in influencing altitudinal migration, since it exhibited no significant correlation with the MNI. Furthermore, we found that the upward migration temperature range of altitudinal migrants ranged between 9.8°C and 13.9°C during spring and the downward migration temperature range ranged between 12.2°C and 7.9°C during autumn. In conclusion, our study and several other studies revealed that the same environmental factors influenced the altitudinal migration patterns of birds in the Hengduan Mountains.
Bluer in the city: urban male lizards exhibit more intense sexual coloration and lower parasite loads than non-urban males
Urbanization is a global phenomenon that involves the transformation of natural areas into urban spaces, thereby subjecting organisms to new selective pressures including a wide variety of pollutants and changes in intra- and interspecific interactions. Considering that projections indicate that by the year 2050, 65% of the human population will live in urban areas and that urbanization is a phenomenon with an upward pattern, identifying these phenotypic traits is vital to implementing conservation and management plans for urban fauna. The urban environment may exert different selective pressures on sexually selected traits than more pristine environments, a phenomenon which has been well studied in birds but is less understood in other vertebrates such as lizards, although they are common inhabitants of urban environments. Here, we compare sexual coloration, parasite load, and immune response in Sceloporus torquatus lizards in urban and non-urban environments of Central Mexico. Our study shows that sexual coloration is more saturated (bluer) in male lizards from urban environments, while UV chroma was higher in non-urban lizards. The average parasite load is lower in urban lizards than in non-urban lizards, and we found a negative relationship between hemoparasite count and sexual coloration in male lizards from non-urban environments but not in male lizards from urban environments. Additionally, non-urban lizards exhibited a higher immune response. In female lizards, sexual coloration differed significantly between urban and non-urban environments, but parasite load and immune response did not differ. These results may be useful to improve herpetofauna conservation plans in urbanized environments.
Chromosome-level genome assembly and population genomic analysis provide insights into the genetic diversity and adaption of Schizopygopsis younghusbandi on the Tibetan Plateau
The Yarlung Tsangpo River on the Tibetan Plateau provides a unique natural environment for studying fish evolution and ecology. However, the genomes and genetic diversity of plateau fish species have been rarely reported. Schizopygopsis younghusbandi, a highly specialized Schizothoracine species and economically important fish inhabiting the Yarlung Tsangpo River, is threatened by overfishing and biological invasion. Herein, we generated a chromosome-level genome of S. younghusbandi and whole-genome resequencing data for 59 individuals from six locations of the river. The results showed that the divergence time between S. younghusbandi and other primitive Schizothoracine species was ∼4.2 Mya, coinciding with the major phase of the Neogene Tibetan uplift. The expanded gene families enriched in DNA integration and replication, ion binding and transport, energy storage, and metabolism likely contribute to the adaption of this species. The S. younghusbandi may have diverged from other highly specialized Schizothoracine species in the Zanda basin during the Pliocene epoch, which underwent major population reduction possibly due to the drastic climate change during the last glacial period. Population analysis indicated that the ancient population might have originated upstream before gradually adapting to evolve into the populations inhabiting the mid-stream and downstream regions of the Yarlung Tsangpo River. In conclusion, the chromosome-level genome and population diversity of S. younghusbandi provide valuable genetic resources for the evolution, ecology, and conservation studies of endemic fishes on the Tibetan Plateau.