CROP SCIENCE

Fall-armyworm invasion, control practices and resistance breeding in Sub-Saharan Africa
Matova PM, Kamutando CN, Magorokosho C, Kutywayo D, Gutsa F and Labuschagne M
Fall armyworm [ (J.E. Smith); FAW] invasion has exacerbated maize ( L.) crop yield losses in sub-Saharan Africa (SSA), already threatened by other stresses, especially those that are climate-change induced. The FAW is difficult to control, manage, or eradicate, because it is polyphagous and trans-boundary, multiplies fast, has a short life cycle and migrates easily, and lacks the diapause growth phase. In this study, FAW and its impact in Africa was reviewed, as well as past and present control strategies for this pest. Pesticides, cultural practices, natural enemies, host-plant resistance, integrated pest management (IPM), and plant breeding approaches were examined as possible control strategies. It was concluded that an IPM control strategy, guided by cultural approaches already being used by farmers, and what can be adopted from the Americas, coupled with an insect-resistance management strategy, is the best option to manage this pest in Africa. These strategies will be strengthened by breeding for multi-trait host-plant resistance through stacking of genes for different modes of control of the pest.
Identification and characterization of high-yielding, short-duration rice genotypes for tropical Asia
Won PLP, Liu H, Banayo NPM, Nie L, Peng S, Islam MR, Sta Cruz P, Collard BCY and Kato Y
Previous efforts to increase the yield of tropical rice ( L.) have focused on medium-duration varieties. However, there is increasing demand for high-yielding short-duration varieties that can adapt to intensified cropping systems and climate change. Our goal was to identify physiological traits associated with high yield in elite short-duration genotypes suitable for tropical Asia. We conducted field experiments in five consecutive growing seasons at the International Rice Research Institute, the Philippines. We selected genotypes in the first two seasons, then performed a detailed characterization of the most promising genotypes in the following three seasons. Of the 50 advanced-generation genotypes, three had consistently high yield and early maturity, with yields 11 to 38% higher than that of 'IRRI104' ('IR50404-57-2-2-3'), a short-duration variety that is widely grown in Southeast Asia. These genotypes were 20 to 32 cm taller than IRRI104. We found that for grain growth, low source capacity, defined as stem nonstructural carbohydrates at heading plus biomass accumulation after heading, was the major factor for the low yield of IRRI104. Although sink capacity (spikelets m × grain weight) in the promising genotypes was comparable to that of IRRI104, they had a 25 to 53% higher source-sink ratio (source capacity/sink capacity) than IRRI104, which was attributed to larger leaf area and greater biomass accumulation during the grain-filling stage. This result suggests that slight changes in plant development to promote height combined with increased leaf area around heading would improve the yield of short-duration rice varieties in tropical Asia.
Identification and diversity of tropical maize inbred lines with resistance to common rust ( Schwein)
Sserumaga JP, Makumbi D, Assanga SO, Mageto EK, Njeri SG, Jumbo BM and Bruce AY
Common rust (CR) caused by Schwein is one of the major foliar diseases of maize ( L.) in Eastern and Southern Africa. This study was conducted to (i) evaluate the response of elite tropical adapted maize inbred lines to and identify resistant lines (ii) examine associations between CR disease parameters and agronomic traits, and (iii) assess the genetic diversity of the inbred lines. Fifty inbred lines were evaluated in field trials for three seasons (2017-2019) in Uganda under artificial inoculation. Disease severity was rated on a 1-9 scale at 21 (Rust 1), 28 (Rust 2), and 35 (Rust 3) days after inoculation. Area under disease progress curve (AUDPC) was calculated. The genetic diversity of the lines was assessed using 44,975 single nucleotide polymorphism markers. Combined ANOVA across seasons showed significant ( < .001) line mean squares for the three rust scores and AUDPC. Heritability was high for Rust 2 (0.90), Rust 3 (0.83), and AUDPC (0.93). Of the 50 lines, 12 were highly resistant to CR. Inbred lines CKL1522, CKL05010, and CKL05017 had significantly lower Rust 3 scores and AUDPC compared to the resistant check CML444 and are potential donors of CR resistance alleles. The genetic correlations between CR disease resistance parameters were positive and strong. A neighbor-joining (NJ) tree and STRUCTURE suggested the presence of three major groups among the lines, with lines highly resistant to CR spread across the three groups. The genetic diversity among the highly resistant lines can be exploited by recycling genetically distant lines to develop new multiple disease resistant inbred lines for hybrid development and deployment.
Optimum and Decorrelated Constrained Multistage Linear Phenotypic Selection Indices Theory
Cerón-Rojas JJ, Toledo FH and Crossa J
Some authors have evaluated the unconstrained and multistage linear phenotypic selection indices (OMLPSI and DMLPSI, respectively) theory. We extended this index theory to the constrained multistage linear phenotypic selection index context, where we denoted OMLPSI and DMLPSI as OCMLPSI and DCMLPSI, respectively. The OCMLPSI (DCMLPSI) is the most general multistage index and includes the OMLPSI (DMLPSI) as a particular case. The OCMLPSI (DCMLPSI) predicts the individual net genetic merit at different individual ages and allows imposing constraints on the genetic gains to make some traits change their mean values based on a predetermined level, while the rest of them remain without restrictions. The OCMLPSI takes into consideration the index correlation values among stages, whereas the DCMLPSI imposes the restriction that the index correlation values among stages be null. The criteria to evaluate OCMLPSI efficiency vs. DCMLPSI efficiency were that the total response of each index must be lower than or equal to the single-stage constrained linear phenotypic selection index response and that the expected genetic gain per trait values should be similar to the constraints imposed by the breeder. We used one real and one simulated dataset to validate the efficiency of the indices. The results indicated that OCMLPSI accuracy when predicting the selection response and expected genetic gain per trait was higher than DCMLPSI accuracy when predicting them. Thus, breeders should use the OCMLPSI when making a phenotypic selection.
Ratooning as a management strategy for lodged or drought-damaged rice crops
Torres RO, Natividad MA, Quintana MR and Henry A
Rice ( L.) plants have the ability to develop ratoon tillers if the terminal growing point is lost, such as when the panicle has been aborted, matured, or harvested. We examined postharvest and midseason ratooning as management strategies for damaged rice crops, both in irrigated and rainfed conditions. Genotypic variation was observed in terms of postharvest ratoon tillering, midseason ratoon crop growth after lodging, and midseason ratoon crop growth after drought stress. The genotypic variation in postharvest ratoon tillering was related to stem carbohydrate levels at the time of main crop harvest and was affected by soil moisture levels at the time of main crop harvest. Drought-tolerant varieties did not consistently show improved ratoon crop growth. After lodging, cutting stems at a height of 30 cm produced the highest numbers of ratoon tillers, and the contribution of the ratoon crop to the total harvestable grain yield was highest when the ratoon crop was initiated at earlier growth stages. The highest ratoon grain yields recovered from lodged crops ranged up to 3.58 t ha. Total grain yield after drought was improved by trimming the leaves and panicles only in certain conditions and did not appear to be correlated with stem carbohydrate levels. These results suggest that management strategies may be recommended to farmers that exploit the ratooning ability of rice for improved recovery after midseason crop damage.
Using machine learning enabled phenotyping to characterize nodulation in three early vegetative stages in soybean
Carley CN, Zubrod MJ, Dutta S and Singh AK
The symbiotic relationship between soybean [ L. (Merr.)] roots and bacteria () lead to the development of nodules, important legume root structures where atmospheric nitrogen (N) is fixed into bio-available ammonia (NH) for plant growth and development. With the recent development of the Soybean Nodule Acquisition Pipeline (SNAP), nodules can more easily be quantified and evaluated for genetic diversity and growth patterns across unique soybean root system architectures. We explored six diverse soybean genotypes across three field year combinations in three early vegetative stages of development and report the unique relationships between soybean nodules in the taproot and non-taproot growth zones of diverse root system architectures of these genotypes. We found unique growth patterns in the nodules of taproots showing genotypic differences in how nodules grew in count, size, and total nodule area per genotype compared to non-taproot nodules. We propose that nodulation should be defined as a function of both nodule count and individual nodule area resulting in a total nodule area per root or growth regions of the root. We also report on the relationships between the nodules and total nitrogen in the seed at maturity, finding a strong correlation between the taproot nodules and final seed nitrogen at maturity. The applications of these findings could lead to an enhanced understanding of the plant- relationship and exploring these relationships could lead to leveraging greater nitrogen use efficiency and nodulation carbon to nitrogen production efficiency across the soybean germplasm.
Resistance to wheat rusts identified in wheat/ chromosome introgressions
Fellers JP, Matthews A, Fritz AK, Rouse MN, Grewal S, Hubbart-Edwards S, King IP and King J
Wheat ( L.) rusts are a worldwide production problem. Plant breeders have used genetic resistance to combat these fungi. However, single-gene resistance is rapidly overcome as a result of frequent occurrence of new virulent fungal strains. Thus, a supply of new resistance sources is continually needed, and new resistance sources are limited within hexaploid wheat genetic stocks. Wild relatives are able to be a resource for new resistance genes but are hindered because of chromosome incapability with domesticated wheats. Twenty-eight double-haploid hexaploid wheat (Boiss.) Eig introgression lines, with introgressions covering the majority of the T genome, were evaluated for resistance to Erikss., Pers.:Pers. f.sp. Erikss. & E. Henning, and Westend. f.sp. Erikss.. At the seedling level, four lines were resistant to races of , six lines were resistant to , and 15 lines were resistant to . At the adult stage, 16 lines were resistant to . Line 355 had resistance to all three rusts and line 161 had resistance to all tested races of . Some of these lines will require further work to reduce the size of the introgressed segment; however, lines 92 and 355 have very small fragments and can be used directly as new resistance donors.
Genetic studies of extra-early provitamin-A maize inbred lines and their hybrids in multiple environments
Badu-Apraku B, Fakorede MAB, Talabi AO, Oyekunle M, Aderounmu M, Lum AF, Ribeiro PF, Adu GB and Toyinbo JO
Vitamin A deficiency, drought, low soil nitrogen (low-N), and parasitism of maize ( L.) cause malnutrition and food insecurity in sub-Saharan Africa. The objectives of this study were to determine combining abilities of extra-early provitamin A (PVA) lines, classify them into heterotic groups (HGs), identify testers, and determine yield stability of hybrids under contrasting environments in two trials. In Trial 1, 190 F hybrids plus six checks were tested under infested, drought, and stress-free environments in Nigeria from 2015-2017. In Trial 2, 35 extra-early yellow hybrids were evaluated under low-N, -infested, and stress-free environments in 2018. TZEEIOR 202 and TZEEIOR 205 had PVA concentrations of 23.98 and 22.56 μg g. TZEEIOR 197 × TZEEIOR 205 (20.1 μg g) and TZEEIOR 202 × TZEEIOR 205 (22.7 μg g) contained about double the PVA level of the commercial check, TZEEI 58 × TZEE-Y Pop STR C5 (11.4 μg g). Both general (GCA) and specific (SCA) combining ability variances were significant for most agronomic traits, although GCA was larger than SCA effects, indicating GCA effects primarily controlled the inheritance of those traits. TZEEIOR 97 and TZEEIOR 197 were identified as inbred testers. TZEEIOR 197 × TZEEIOR 205 was identified as a single-cross tester and the most stable and highest-yielding hybrid across environments. TZEEIOR 202 and TZEEIOR 205 should be invaluable resources for breeding for high PVA. Provitamin A level was independent of hybrid yield potential, indicating that selection of superior hybrids with elevated PVA levels should be feasible.
Field resistance to wheat stem rust in durum wheat accessions deposited at the USDA National Small Grains Collection
Olivera PD, Bulbula WD, Badebo A, Bockelman HE, Edae EA and Jin Y
Wheat stem rust, caused by f. sp. , is a re-emerging disease, posing a significant threat to durum wheat production worldwide. The limited number of stem rust resistance genes in modern cultivars compels us to identify and incorporate new effective genes in durum wheat breeding programs. We evaluated 8,245 spring durum wheat accessions deposited at the USDA National Small Grains Collection (NSGC) for resistance in field stem rust nurseries in Debre Zeit, Ethiopia and St. Paul, MN (USA). A higher level of disease development was observed at the Debre Zeit nursery compared with St. Paul, and the effective alleles of in this nursery did not display the level of resistance observed at the St. Paul nursery. Four hundred and ninety-one (∽6%) accessions exhibited resistant to moderately susceptible responses after three field evaluations at Debre Zeit and two at St. Paul. Nearly 70% of these accessions originated from Ethiopia, Mexico, Egypt, and USA. Eight additional countries, namely Portugal, Turkey, Italy, Canada, Chile, Australia, Syria, and Tunisia contributed to 19% of the resistant to moderately susceptible entries. Among the 491 resistant to moderately susceptible accessions, 53.8% (n = 265) were landraces, and 28.4% (n = 139) and 11.4% (n = 55) were breeding lines and cultivars, respectively. Breeding lines and cultivars displayed a higher level and frequency of resistance than the landraces. We concluded that a large number of durum wheat accessions from diverse origins deposited at the NSGC can be exploited for diversifying and improving stem rust resistance in wheat.
Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations
Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G and Hickey JM
This paper presents an extension to a heuristic method for phasing and imputation of genotypes of descendants in biparental populations so that it can phase and impute genotypes of parents that are ungenotyped or partially genotyped. The imputed genotypes of the parent are used to impute low-density (Ld) genotyped descendants to high density (Hd). The extension was implemented as part of the AlphaPlantImpute software and works in three steps. First, it identifies whether a parent has no or Ld genotypes and identifies its relatives that have Hd genotypes. Second, using the Hd genotypes of relatives, it determines whether the parent is homozygous or heterozygous for a given locus. Third, it phases heterozygous positions of the parent by matching haplotypes to its relatives. We measured the accuracy (correlation between true and imputed genotypes) of imputing parent genotypes in simulated biparental populations from different scenarios. We tested the imputation accuracy of the missing parent's descendants using the true genotype of the parent and compared this with using the imputed genotypes of the parent. Across all scenarios, the imputation accuracy of a parent was >0.98 and did not drop below ∼0.96. The imputation accuracy of a parent was always higher when it was inbred than outbred. Including ancestors of the parent at Hd, increasing the number of crosses and the number of Hd descendants increased the imputation accuracy. The high imputation accuracy achieved for the parent translated to little or no impact on the imputation accuracy of its descendants.
Cotton photosynthetic productivity enhancement through uniform row-spacing with optimal plant density in Xinjiang, China
Hu L, Pan X, Wang X, Hu Q, Wang X, Zhang H, Xue Q and Song M
Xinjiang is currently the most dominant cotton ( L.)-growing region in China and possesses abundant radiation resource. The cultivation techniques such as wide and narrow row-spacing and high density are widely adopted to obtain high cotton yield in the region. However, the region is facing some problems including poor light transmittance in the field and low exploitation for light resources under the current planting pattern which impedes further growth in cotton yields. Therefore, it is essential to develop some cultivation practices to increase radiation use efficiency (RUE) and cotton yields in Xinjiang. Here we conducted a field experiment to quantify the effects of row spacing pattern and plant density on RUE, intercepted photosynthetically active radiation from May to August (IRAR), and lint yield during 2017 and 2018. In this study, we designed two row-spacing configurations (R, wide and narrow configuration, 66 cm + 10 cm; R, uniform row-spacing configuration, 76 cm) and six plant densities (4.5, 9.0, 13.5, 18.0, 22.5, and 27.0 plants m). The RUE, lint yield, and number of bolls were higher in R than R by 4.1-5.9, 2.5-4.8, and 9.1-14.2%, respectively. The RUE significantly increased with plant density, but lint yield stabilized at 18.0 plants m. Moreover, RUE had more significant positive effects on boll number and lint yield. Overall, we found that R combined with optimal plant densities (13.5-18.0 plants m) would be an effective strategy to achieve higher RUE and yields in the Xinjiang cotton system.
The statistical theory of linear selection indices from phenotypic to genomic selection
Cerón-Rojas JJ and Crossa J
A linear selection index (LSI) can be a linear combination of phenotypic values, marker scores, and genomic estimated breeding values (GEBVs); phenotypic values and marker scores; or phenotypic values and GEBVs jointly. The main objective of the LSI is to predict the net genetic merit (), which is a linear combination of unobservable individual traits' breeding values, weighted by the trait economic values; thus, the target of LSI is not a parameter but rather the unobserved random values. The LSI can be single-stage or multi-stage, where the latter are methods for selecting one or more individual traits available at different times or stages of development in both plants and animals. Likewise, LSIs can be either constrained or unconstrained. A constrained LSI imposes predetermined genetic gain on expected genetic gain per trait and includes the unconstrained LSI as particular cases. The main LSI parameters are the selection response, the expected genetic gain per trait, and its correlation with . When the population mean is zero, the selection response and expected genetic gain per trait are, respectively, the conditional mean of and the genotypic values, given the LSI values. The application of LSI theory is rapidly diversifying; however, because LSIs are based on the best linear predictor and on the canonical correlation theory, the LSI theory can be explained in a simple form. We provided a review of the statistical theory of the LSI from phenotypic to genomic selection showing their relationships, advantages, and limitations, which should allow breeders to use the LSI theory confidently in breeding programs.
Genome-wide association mapping of Hagberg falling number, protein content, test weight, and grain yield in U.K. wheat
White J, Sharma R, Balding D, Cockram J and Mackay IJ
Association mapping using crop cultivars allows identification of genetic loci of direct relevance to breeding. Here, 150 U.K. wheat ( L.) cultivars genotyped with 23,288 single nucleotide polymorphisms (SNPs) were used for genome-wide association studies (GWAS) using historical phenotypic data for grain protein content, Hagberg falling number (HFN), test weight, and grain yield. Power calculations indicated experimental design would enable detection of quantitative trait loci (QTL) explaining ≥20% of the variation (PVE) at a relatively high power of >80%, falling to 40% for detection of a SNP with an ≥ .5 with the same QTL. Genome-wide association studies identified marker-trait associations for all four traits. For HFN ( = .89), six QTL were identified, including a major locus on chromosome 7B explaining 49% PVE and reducing HFN by 44 s. For protein content ( = 0.86), 10 QTL were found on chromosomes 1A, 2A, 2B, 3A, 3B, and 6B, together explaining 48.9% PVE. For test weight, five QTL were identified (one on 1B and four on 3B; 26.3% PVE). Finally, 14 loci were identified for grain yield ( = 0.95) on eight chromosomes (1A, 2A, 2B, 2D, 3A, 5B, 6A, 6B; 68.1% PVE), of which five were located within 16 Mbp of genetic regions previously identified as under breeder selection in European wheat. Our study demonstrates the utility of exploiting historical crop datasets, identifying genomic targets for independent validation, and ultimately for wheat genetic improvement.
Combining ability of extra-early biofortified maize inbreds under infestation and low soil nitrogen
Oyekale SA, Badu-Apraku B and Adetimirin VO
(Del.) Benth parasitism, low soil N, and nutritional deficiencies of normal-endosperm maize ( L.) threaten maize yield and exacerbate nutritional problems in sub-Sahara Africa (SSA). This study was conducted (a) to evaluate genetic variation among extra-early maturing maize hybrids with provitamin A and quality protein characteristics, (b) to investigate gene action governing the inheritance of resistance, grain yield, low N tolerance, and other measured traits under low-N, high-N, and -infested environments, and (c) to identify hybrids with high yield and stability across environments. One hundred and fifty hybrids developed using North Carolina Design II were evaluated with six checks under low-N, high-N, and -infested environments in Nigeria. Mean squares for hybrids were highly significant ( < .01) for grain yield and other traits across environments. Only general combining ability (GCA) for female and/or male mean squares were significant for measured traits under low N. In addition to significant GCA effects for most traits, specific combining ability was significant ( < .05) for emergence count under infestation, and ear height and ears per plant under high N, indicating that additive and nonadditive genetic effects controlled the inheritance of few traits under and high N, whereas additive genetic effect governed the inheritance of the traits under low N. Hybrids TZEEIORQ 55 × TZEEIORQ 26, TZEEIORQ 49 × TZEEIORQ 75, and TZEEIORQ 52 × TZEEIORQ 43 were high yielding and stable across environments and have potential for improving nutrition and maize yields in SSA.
Genetics of extra-early-maturing yellow and orange quality protein maize inbreds and derived hybrids under low soil nitrogen and infestation
Abu P, Badu-Apraku B, Ifie BE, Tongoona P, Ribeiro PF, Obeng-Bio E and Offei SK
The development and commercialization of extra-early quality protein maize (QPM)-provitamin A (PVA) hybrids that are tolerant of low soil N (LN) and resistant are essential for addressing the food insecurity and undernourishment challenges currently faced by sub-Saharan Africa (SSA). This study was designed (a) to determine the genetic effects regulating grain yield (GY) and important secondary traits of extra-early yellow and orange QPM-PVA inbred lines under LN, infested, and high-N (HN) conditions, (b) to investigate whether maternal genes influenced the inheritance of GY and other secondary traits, (c) to assess the GY and stability of the hybrids across the three management conditions, and (d) to examine the relationship between single nucleotide polymorphism (SNP) marker-based genetic distances and GY. Twenty-four inbred lines were used to produce ninety-six single cross hybrids using the North Carolina Design II. The performance of the hybrids plus four checks was assessed across LN, -infested, and HN management conditions in Ghana and Nigeria in 2018. Additive genetic variances were preponderant over nonadditive genetic variances for GY and most secondary traits in each and across environments. TZEEQI 358 exhibited significant and positive male and female GCA effects for GY under LN, infestation, HN, and across management conditions indicating that favorable alleles for GY could be donated by TZEEQI 358. Maternal effects regulated the inheritance of plant height under the infested conditions. Genetic distances were associated with GY under LN, infestation, and HN conditions. TZEEIORQ 58 TZEEQI 397 demonstrated high GY and stability of performance; therefore, it should be further tested under multiple environments for commercialization.
Genomic characterization of Ugandan smallholder farmer-preferred cassava varieties
Iragaba P, Kawuki RS, Bauchet G, Ramu P, Tufan HA, Earle ED, Gore MA and Wolfe M
Understanding the genetic relationships among farmer-preferred cassava ( Crantz) varieties is indispensable to genetic improvement efforts. In this study, we present a genetic analysis of 547 samples of cassava grown by 192 smallholder farmers, which were sampled at random within four districts in Uganda. We genotyped these samples at 287,952 single nucleotide polymorphisms using genotyping-by-sequencing and co-analyzed them with 349 cassava samples from the national breeding program in Uganda. The samples collected from smallholders consisted of 86 genetically unique varieties, as assessed using a genetic distance-based approach. Of these varieties, most were cultivated in only one district (30 in Kibaale, 19 in Masindi, 14 in Arua, and three in Apac), and only three were cultivated across all districts. The genetic differentiation we observed among farming districts in Uganda (mean fixation index [ ] = .003) is similar to divergence observed within other countries. Despite the fact that none of the breeding lines were directly observed in farmer fields, genetic divergence between the populations was low (  = .020). Interestingly, we detected the presence of introgressions from the wild relative Müll. Arg. on chromosomes 1 and 4, which implies ancestry with cassava breeding lines. Given the apparently similar pool of alleles in the breeding germplasm, it is likely that breeders have the raw genetic material they require to match the farmer-preferred trait combinations necessary for adoption. Our study highlights the importance of understanding the genetic makeup of cassava currently grown by smallholder farmers and relative to that of plant breeding germplasm.
Genetic parameters, prediction, and selection in a white Guinea yam early-generation breeding population using pedigree information
Asfaw A, Aderonmu DS, Darkwa K, De Koeyer D, Agre P, Abe A, Olasanmi B, Adebola P and Asiedu R
Better understanding of the genetic control of traits in breeding populations is crucial for the selection of superior varieties and parents. This study aimed to assess genetic parameters and breeding values for six essential traits in a white Guinea yam ( Poir.) breeding population. For this, pedigree-based best linear unbiased prediction (P-BLUP) was used. The results revealed significant nonadditive genetic variances and medium to high (.45-.79) broad-sense heritability estimates for the traits studied. The pattern of associations among the genetic values of the traits suggests that selection based on a multiple-trait selection index has potential for identifying superior breeding lines. Parental breeding values predicted using progeny performance identified 13 clones with high genetic potential for simultaneous improvement of the measured traits in the yam breeding program. Subsets of progeny were identified for intermating or further variety testing based on additive genetic and total genetic values. Selection of the top 5% progenies based on the multi-trait index revealed positive genetic gains for fresh tuber yield (t ha), tuber yield (kg plant), and average tuber weight (kg). However, genetic gain was negative for tuber dry matter content and resistance in comparison with standard varieties. Our results show the relevance of P-BLUP for the selection of superior parental clones and progenies with higher breeding values for interbreeding and higher genotypic value for variety development in yam.
Line × tester analysis of maize grain yield under acid and non-acid soil conditions
Mutimaamba C, MacRobert J, Cairns JE, Magorokosho C, Ndhlela T, Mukungurutse C, Minnaar-Ontong A and Labuschagne M
Soil acidity has received less attention than other biophysical stresses such as drought and low N, despite accounting for a considerable reduction in maize ( L.) productivity in many parts of southern Africa. The line × tester mating design was used to determine the general combining ability (GCA) for grain yield of 14 maize inbred lines and the specific combining ability (SCA) of their corresponding crosses. Thirty-three single-cross hybrids were evaluated under acid and optimum soils across 11 environments over three seasons. Across environments, mean grain yield reduction ranged from 11 to 37% due to low pH. Additive gene action was more important than nonadditive gene action for grain yield under both soil conditions. Tester GCA effects were larger for grain yield than GCA effects of lines and SCA effects of crosses for both soil conditions. Tester GCA effects were less sensitive to environmental fluctuations than line GCA effects and SCA effects of crosses. Cross combinations with desirable SCA effects for grain yield were associated with high per se grain yield, which suggests that SCA was a good predictor of grain yield in this study. These crosses consisted of good × good and good × poor general combiners, which indicates that GCA was a good predictor of grain yield. Therefore, priority should be given for yield selection in progenies and hybridization of specific crosses with desirable SCA when breeding acid-soil-tolerant maize.
To meet grand challenges, agricultural scientists must engage in the politics of constructive collective action
Jordan N, Gutknecht J, Bybee-Finley KA, Hunter M, Krupnik TJ, Pittelkow CM, Prasad PVV and Snapp S
Agriculture now faces grand challenges, with crucial implications for the global future. These include the need to increase production of nutrient-dense food, to improve agriculture's effects on soil, water, wildlife, and climate, and to enhance equity and justice in food and agricultural systems. We argue that certain politics of constructive collective action-and integral involvement of agricultural scientists in these politics-are essential for meeting grand challenges and other complex problems facing agriculture in the 21st century. To spur reflection and deliberation about the role of politics in the work of agricultural scientists, we outline these politics of constructive collective action. These serve to organize forceful responses to grand challenges through coordinated and cooperative action taken by multiple sectors of society. In essence, these politics entail (1) building bonds of affinity within a heterogenous network, (2) developing a shared roadmap for collective action, and (3) taking sustained action together. These emerging politics differ markedly from more commonly discussed forms of political activity by scientists, e.g., policy advisory, policy advocacy, and protest. We present key premises for our thesis, and then describe and discuss a politics of constructive collective action, the necessary roles of agricultural scientists, and an agenda for exploring and expanding their engagement in these politics.
Variance component estimations and mega-environments for sweetpotato breeding in West Africa
Swanckaert J, Akansake D, Adofo K, Acheremu K, De Boeck B, Eyzaguirre R, Grüneberg WJ, Low JW and Campos H
The current study was aimed at identifying mega-environments in Ghana and evaluating adaptability of superior sweetpotato [ (L.) Lam.] genotypes from a targeted breeding effort. Three sets of genotypes were evaluated in multi-environment trials (MET). Twelve sweetpotato varieties were evaluated across nine environments representing the main agro-ecological zones in Ghana. MET analysis was conducted using a stage-wise approach with the genotype × environment (G × E) table of means used as a starting point to model the G × E interaction for sweetpotato yield. Emphasis was given to the genetic correlation matrix used in a second-order factor analytic model that accommodates heterogeneity of genetic variances across environments. A genotype main effect and G × E interaction of storage root yield explained 82% of the variation in the first principal component, and visualized the genetic variances and discriminating power of each environment and the genetic correlation between the environments. Two mega-environments, corresponding to northern and southern trial sites, were delineated. Six breeding lines selected from the south and eight breeding lines selected from the north were tested and compared to two common check clones at five locations in Ghana. A Finlay-Wilkinson stability analysis resulted in stable performances within the target mega-environment from which the genotypes were selected, but predominantly without adaptation to the other region. Our results provide a strong rationale for running separate programs to allow for faster genetic progress in each of these two major West African mega-environments by selecting for specific and broad adaptation.
Interaction of planting system with radiation-use efficiency in wheat lines
Moroyoqui-Parra MA, Molero G, Reynolds MP, Gaju O, Murchie EH and Foulkes MJ
Radiation-use efficiency (RUE) is an important trait for raising biomass and yield potential in plant breeding. However, the effect of the planting system (PS) on genetic variation in RUE has not been previously investigated. Our objectives were to quantify genetic variation in RUE, biomass and grain yield in raised-bed and flat-basin planting systems, and associations with canopy-architecture traits (flag-leaf angle and curvature). Twelve spring wheat ( L.) cultivars were evaluated under irrigated conditions for 3 years in North West Mexico using raised-bed and flat-basin planting systems. Canopy architecture traits were measured at booting and anthesis + 7 days. Grain yield (10.6%), biomass (7.6%), and pre-grain-filling RUE (9.7%) were higher in raised beds than flat basins, while a significant planting system × genotype interaction was found for grain yield. Genetic variation in pre-grain-filling RUE was associated with biomass and grain yield in beds and basins. In flat basins, higher pre-grain-filling RUE was correlated with a more upright flag-leaf angle but not in raised beds. In raised beds, cultivars with less upright flag-leaf angle had greater fractional light interception pre-anthesis. Taller semi-dwarf cultivars intercepted relatively more radiation in the beds than the flats before anthesis, consistent with the taller cultivars showing relatively greater increases in yield in beds compared to flats. Our results indicated that the evaluation of genotypes for RUE and biomass in wheat breeding should take into account planting systems to capture genotype × PS effects. In addition, the results demonstrate how flag-leaf angle has a different effect depending on the planting system.