BIOGEOCHEMISTRY

Estimating phytoplankton stoichiometry from routinely collected monitoring data
Yuan LL and Jones JR
Accurately estimating the elemental stoichiometry of phytoplankton is critical for understanding biogeochemical cycles. In laboratory experiments, stoichiometric ratios vary among species and with changes in environmental conditions. Field observations of total phosphorus (P) and total nitrogen (N) collected at regional and national scales can supplement and expand insights into factors influencing phytoplankton stoichiometry, but analyses applied to these data can introduce biases that affect interpretations of the observed patterns. We introduce an analytical approach for estimating the ratio between phytoplankton N and P from the particulate fraction of nutrient pools in lake samples. We use Bayesian models to represent observations of particulate P and N as the sum of contributions from nutrients bound within phytoplankton and nutrients associated with non-phytoplankton suspended sediment. Application of this approach to particulate nutrient data collected in Missouri impoundments yields estimates of the mass ratio of N:P in phytoplankton ranging from 8-10 across a variety of lakes and seasons. N:P in particulate matter ranged from 6 to 70, a variability driven by differences in nutrients bound to non-phytoplankton suspended sediment. We adapted the Bayesian models to estimate N:P using more commonly available measurements of total P and total N and applied this model to a continental-scale monitoring data set. We compared phytoplankton nutrient content estimated from the two analyses and found that when datasets lack direct measurements of particulate nutrient concentrations, the model estimate of phytoplankton nutrient content includes contributions from nutrients within phytoplankton and dissolved nutrients that are associated with changes in phytoplankton biomass.
WIDESPREAD CAPACITY FOR DENITRIFICATION ACROSS A BOREAL FOREST LANDSCAPE
Burnett MS, Schütte UME and Harms TK
A warming climate combined with frequent and severe fires cause permafrost to thaw, especially in the region of discontinuous permafrost, where soil temperatures may only be a few degrees below 0 °C. Soil thaw releases carbon (C) and nitrogen (N) into the actively cycling pools, and whereas C emissions following permafrost thaw are well documented, the fates of N remain unclear. Denitrification could release N from ecosystems as nitrous oxide (NO) or nitrogen gas (N), but the contributions of these processes to the high-latitude N cycle remain uncertain. We quantified microbial capacity for denitrification and NO production in boreal soils, lakes, and streams using anoxic C- and N-amended assays, and assessed correlates of denitrifying enzyme activity (DEA) in Interior Alaska. Riparian soils and stream sediments supported the highest potential rates of denitrification, upland soils were intermediate, and lakes supported lower rates, whereas deep permafrost soils supported little denitrification. Time since fire had no effect on denitrification potential in upland soils. Across all landscape positions, DEA was negatively correlated with ammonium pools. Within each landscape position, potential rate of denitrification increased with soil or sediment organic matter content. Widespread N loss to denitrification in boreal forests could constrain the capacity for N-limited primary producers to maintain C stocks in soils following permafrost thaw.
Using fixed-potential electrodes to quantify iron and manganese redox cycling in upland soils
Hodges C, Regan JM, Forsythe B, Oakley D, Kaye J and Brantley SL
Although metal redox reactions in soils can strongly affect carbon mineralization and other important soil processes, little is known about temporal variations in this redox cycling. Recently, potentiostatically poised electrodes (fixed-potential electrodes) have shown promise for measuring the rate of oxidation and reduction at a specific reduction potential in situ in riparian soils. Here for the first time, we used these electrodes in unsaturated soils to explore the fine-scale temporal redox fluctuations of both iron and manganese in response to environmental conditions. We used three-electrode systems with working electrodes fixed at 100 mV (vs. SHE) and 400 mV at 50 cm and 70 cm in the valley floor soil of a headwater watershed. Electrodes fixed at 100 mV to mimic iron oxides and at 400 mV to mimic manganese oxides allowed real-time reduction and oxidation rates to be calculated from temporal variations in the electric current. Electrode measurements were compared to soil porewater chemistry, pCO, pO, groundwater level, resistivity measurements, and precipitation. The fixed-potential electrodes recorded fluctuations over timescales from minutes to weeks. A consistently negative current was observed at 100 mV (interpreted as oxidation of Fe), while the 400-mV electrode fluctuated between negative and positive currents (Mn oxidation and reduction). When the water table rose above the electrodes, reduction was promoted, but above the water table, rainfall only stimulated oxidation. Precipitation frequency thus drove the multi-day reduction or oxidation events (return interval of 5-10 days). These measurements represent the first direct detections of frequency, period, and amplitude of oxidation and reduction events in unsaturated soils. Fixed-potential electrodes hold promise for accurately exploring the fast-changing biogeochemical impacts of metal redox cycling in soils and represent a significant advance for reactions that have been difficult to quantify.
Organic matter cycling in a model restored wetland receiving complex effluent
Zhou X, Johnston SE and Bogard MJ
Wetlands have been used to treat anthropogenic effluents for decades due to their intense biogeochemical processes that transform and uptake nutrients, organic matter, and toxins. Despite these known functions, we lack generalizable knowledge of effluent-derived dissolved organic matter (DOM) cycling in wetlands. Here, we quantify the cycling of DOM in one of Canada's more economically important wetland complexes (Frank Lake, Alberta), restored to hydrologic permanence in the 1980s using urban and agro-industrial effluents. Optical analyses and PARAFAC (parallel factor analysis) modelling showed a clear compositional change from more bioavailable and protein-like DOM at effluent input sites to more aromatic and humic-like at the wetland outflow, likely due to DOM processing and inputs from marsh plants and wetland soils. Microbial incubations showed that effluent DOM was rapidly consumed, with the half-life of DOM increasing from as low as 35 days for effluent, to 462 days at the outflow, as a function of compositional shifts toward aromatic, humic-like material. Long-term averaged dissolved organic carbon (DOC) export was low compared to many wetlands (10.3 ± 2.0 g C m yr). Consistent with predictions based on water residence time, our mass balance showed Frank Lake was a net source of DOM across all measured years, but shifted from a source to sink among wet and drought years that respectively shortened or lengthened the water residence and DOM processing times. Overall, Frank Lake processes and transforms effluent DOM, despite being a longer-term net source of DOM to downstream environments.
Geochemical properties of blue carbon sediments through an elevation gradient: study of an anthropogenically impacted coastal lagoon
Grey A, Costeira R, Lorenzo E, O'Kane S, McCaul MV, McCarthy T, Jordan SF, Allen CCR and Kelleher BP
Global research is showing that coastal blue carbon ecosystems are vulnerable to climate change driven threats including accelerated sea-level rise and prolonged periods of drought. Furthermore, direct anthropogenic impacts present immediate threats through deterioration of coastal water quality, land reclamation, long-term impact to sediment biogeochemical cycling. These threats will invariably alter the future efficacy of carbon (C) sequestration processes and it is imperative that currently existing blue carbon habitats be protected. Knowledge of underlying biogeochemical, physical and hydrological interactions occurring in functioning blue carbon habitats is essential for developing strategies to mitigate threats, and promote conditions to optimise C sequestration/storage. In this current work, we investigated how sediment geochemistry (0-10 cm depth) responds to elevation, an edaphic factor driven by long-term hydrological regimes consequently exerting control over particle sedimentation rates and vegetation succession. This study was performed in an anthropogenically impacted blue carbon habitat along a coastal ecotone encompassing an elevation gradient transect from intertidal sediments (un-vegetated and covered daily by tidal water), through vegetated salt marsh sediments (periodically covered by spring tides and flooding events), on Bull Island, Dublin Bay. We determined the quantity and distributions of bulk geochemical characteristics in sediments through the elevation gradient, including total organic carbon (TOC), total nitrogen (TN), total metals, silt, clay, and also, 16 individual polyaromatic hydrocarbon's (PAH's) as an indication of anthropogenic input. Elevation measurements for sample sites were determined on this gradient using a LiDAR scanner accompanied by an IGI inertial measurement unit (IMU) on board a light aircraft. Considering the gradient from the Tidal mud zone (T), through the low-mid marsh (M) to the most elevated upper marsh (H), there were significant differences between all zones for many measured environmental variables. The results of significance testing using Kruskal-Wallis analysis revealed, that %C, %N, PAH (µg/g), Mn (mg/kg), TOC:NH and pH are significantly different between all zones on the elevation gradient. The highest values for all these variables exists (excluding pH which followed a reverse trend) in zone H, decreasing in zone M and lowest in the un-vegetated zone T. TC content is 16 fold higher overall in vegetated (3.43 -21.84%) than uninhabited (0.21-0.56%) sediments. TN was over 50 times higher (0.24-1.76%), more specifically increasing in % mass on approach to the upper salt marsh with distance from the tidal flats sediments zone T (0.002-0.05%). Clay and silt distributions were greatest in vegetated sediments, increasing in % content towards upper marsh zones The retention of water, metals, PAHs, mud, chloride ions, NH , PO and SO increased with elevated C concentrations, concurrently where pH significantly decreased. Sediments were categorized with respect to PAH contamination where all SM samples were placed in the high polluted category. The results highlight the ability of Blue C sediments to immobilise increasing levels of C, N, and metals, and PAH with over time and with both lateral and vertical expansion. This study provides a valuable data set for an anthropogenically impacted blue carbon habitat predicted to suffer from sea-level rise and exponential urban development.
Biogeochemical properties of blue carbon sediments influence the distribution and monomer composition of bacterial polyhydroxyalkanoates (PHA)
Grey A, Costeira R, Lorenzo E, O'Kane S, McCaul MV, McCarthy T, Jordan SF, Allen CCR and Kelleher BP
Coastal wetlands are highly efficient 'blue carbon' sinks which contribute to mitigating climate change through the long-term removal of atmospheric CO and capture of carbon (C). Microorganisms are integral to C sequestration in blue carbon sediments and face a myriad of natural and anthropogenic pressures yet their adaptive responses are poorly understood. One such response in bacteria is the alteration of biomass lipids, specifically through the accumulation of polyhydroxyalkanoates (PHAs) and alteration of membrane phospholipid fatty acids (PLFA). PHAs are highly reduced bacterial storage polymers that increase bacterial fitness in changing environments. In this study, we investigated the distribution of microbial PHA, PLFA profiles, community structure and response to changes in sediment geochemistry along an elevation gradient from intertidal to vegetated supratidal sediments. We found highest PHA accumulation, monomer diversity and expression of lipid stress indices in elevated and vegetated sediments where C, nitrogen (N), PAH and heavy metals increased, and pH was significantly lower. This was accompanied by a reduction in bacterial diversity and a shift to higher abundances of microbial community members favouring complex C degradation. Results presented here describe a connection between bacterial PHA accumulation, membrane lipid adaptation, microbial community composition and polluted C rich sediments.
Rapid response of moss-associated nitrogen fixation to nutrient additions in tropical montane cloud forests with different successional stages
Clasen LA, Alvarenga DO, Wang Y, Andersen RF and Rousk K
Nitrogen (N) fixation in association with mosses could be a key source of new N in tropical montane cloud forests since these forests maintain high humidity levels and stable temperatures, both of which are important to N fixation. Here, nutrient availability could be a prominent control of N fixation processes. However, the mechanisms and extent of these controls, particularly in forests at different successional stages, remains unknown to date. To address this knowledge gap, we investigated the impact of N, phosphorus (P) and molybdenum (Mo) additions on moss-associated N fixation in tropical montane cloud forests of two successional stages, an old-growth forest and an early-successional natural regrowth forest. We hypothesized that if N is available, N fixation rates would be rapidly reduced, while P and Mo would promote nitrogenase activity. Our results show that Mo additions did not affect N fixation rates, whereas N and P additions, in different doses and combinations, immediately reduced N fixation in both forests. Nonetheless, rates recovered within 1 year of nutrient additions. Nitrogen fixation rates associated with ground-covering mosses were similar in both forests. Interestingly, one year after the nutrient additions, N fixation rates across all the treatments were higher in the natural regrowth forests than the mature forests, suggesting more nutrient limitation in these regrowing forests, likely as a result of higher demand for growth. Our study highlights how moss-associated N fixation responds to changes in nutrient availability across distinct successional stages, deepening our understanding of processes that contributes to tropical montane cloud forests.
Evidence linking calcium to increased organo-mineral association in soils
Rowley MC, Grand S, Spangenberg JE and Verrecchia EP
Geochemical indicators are emerging as important predictors of soil organic carbon (SOC) dynamics, but evidence concerning the role of calcium (Ca) is scarce. This study investigates the role of Ca prevalence in SOC accumulation by comparing otherwise similar sites with (CaCO-bearing) or without carbonates (CaCO-free). We measured the SOC content and indicators of organic matter quality (C stable isotope composition, expressed as C values, and thermal stability) in bulk soil samples. We then used sequential sonication and density fractionation (DF) to separate two occluded pools from free and mineral-associated SOC. The SOC content, mass, and C values were determined in all the fractions. X-ray photoelectron spectroscopy was used to investigate the surface chemistry of selected fractions. Our hypothesis was that occlusion would be more prevalent at the CaCO-bearing site due to the influence of Ca on aggregation, inhibiting oxidative transformation, and preserving lower C values. Bulk SOC content was twice as high in the CaCO-bearing profiles, which also had lower bulk C values, and more occluded SOC. Yet, contrary to our hypothesis, occlusion only accounted for a small proportion of total SOC (< 10%). Instead, it was the heavy fraction (HF), containing mineral-associated organic C, which accounted for the majority of total SOC and for the lower bulk C values. Overall, an increased Ca prevalence was associated with a near-doubling of mineral-associated SOC content. Future investigations should now aim to isolate Ca-mediated complexation processes that increase organo-mineral association and preserve organic matter with lower C values.
Association between soil organic carbon and calcium in acidic grassland soils from Point Reyes National Seashore, CA
Rowley MC, Nico PS, Bone SE, Marcus MA, Pegoraro EF, Castanha C, Kang K, Bhattacharyya A, Torn MS and Peña J
Organo-mineral and organo-metal associations play an important role in the retention and accumulation of soil organic carbon (SOC). Recent studies have demonstrated a positive correlation between calcium (Ca) and SOC content in a range of soil types. However, most of these studies have focused on soils that contain calcium carbonate (pH > 6). To assess the importance of Ca-SOC associations in lower pH soils, we investigated their physical and chemical interaction in the grassland soils of Point Reyes National Seashore (CA, USA) at a range of spatial scales. Multivariate analyses of our bulk soil characterisation dataset showed a strong correlation between exchangeable Ca (Ca; 5-8.3 c.mol kg) and SOC (0.6-4%) content. Additionally, linear combination fitting (LCF) of bulk Ca K-edge X-ray absorption near-edge structure (XANES) spectra revealed that Ca was predominantly associated with organic carbon across all samples. Scanning transmission X-ray microscopy near-edge X-ray absorption fine structure spectroscopy (STXM C/Ca NEXAFS) showed that Ca had a strong spatial correlation with C at the microscale. The STXM C NEXAFS K-edge spectra indicated that SOC had a higher abundance of aromatic/olefinic and phenolic C functional groups when associated with Ca, relative to C associated with Fe. In regions of high Ca-C association, the STXM C NEXAFS spectra were similar to the spectrum from lignin, with moderate changes in peak intensities and positions that are consistent with oxidative C transformation. Through this association, Ca thus seems to be preferentially associated with plant-like organic matter that has undergone some oxidative transformation, at depth in acidic grassland soils of California. Our study highlights the importance of Ca-SOC complexation in acidic grassland soils and provides a conceptual model of its contribution to SOC preservation, a research area that has previously been unexplored.
Peatland restoration pathways to mitigate greenhouse gas emissions and retain peat carbon
Mander Ü, Espenberg M, Melling L and Kull A
Peatlands play a crucial role in the global carbon (C) cycle, making their restoration a key strategy for mitigating greenhouse gas (GHG) emissions and retaining C. This study analyses the most common restoration pathways employed in boreal and temperate peatlands, potentially applicable in tropical peat swamp forests. Our analysis focuses on the GHG emissions and C retention potential of the restoration measures. To assess the C stock change in restored (rewetted) peatlands and afforested peatlands with continuous drainage, we adopt a conceptual approach that considers short-term C capture (GHG exchange between the atmosphere and the peatland ecosystem) and long-term C sequestration in peat. The primary criterion of our conceptual model is the capacity of restoration measures to capture C and reduce GHG emissions. Our findings indicate that carbon dioxide (CO) is the most influential part of long-term climate impact of restored peatlands, whereas moderate methane (CH) emissions and low NO fluxes are relatively unimportant. However, lateral losses of dissolved and particulate C in water can account up to a half of the total C stock change. Among the restored peatland types, Sphagnum paludiculture showed the highest CO capture, followed by shallow lakes and reed/grass paludiculture. Shallow lakeshore vegetation in restored peatlands can reduce CO emissions and sequester C but still emit CH, particularly during the first 20 years after restoration. Our conceptual modelling approach reveals that over a 300-year period, under stable climate conditions, drained bog forests can lose up to 50% of initial C content. In managed (regularly harvested) and continuously drained peatland forests, C accumulation in biomass and litter input does not compensate C losses from peat. In contrast, rewetted unmanaged peatland forests are turning into a persistent C sink. The modelling results emphasized the importance of long-term C balance analysis which considers soil C accumulation, moving beyond the short-term C cycling between vegetation and the atmosphere.
Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology
Gios E, Verbruggen E, Audet J, Burns R, Butterbach-Bahl K, Espenberg M, Fritz C, Glatzel S, Jurasinski G, Larmola T, Mander Ü, Nielsen C, Rodriguez AF, Scheer C, Zak D and Silvennoinen HM
Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies.
Factors influencing seasonal chemistry patterns in Virginia mountain streams
Riscassi AL, Scanlon TM and Galloway JN
The relative influence of seasonal patterns in hydrological flow and seasonal differences in biological and geochemical activity on stream chemistry patterns is difficult to discern because they covary; temperate systems are characterized by lower mean flow in the summer (i.e. corresponding to deeper flow paths, elevated temperature, and biological activity), and higher mean flow in the winter (i.e. corresponding to shallower flow paths, depressed temperature, and biological dormancy). Using 2018 data, when seasonal stream flow conditions reversed, and two prior conventional water years, the relationship between monthly acid-relevant analyte concentrations and streamflow were compared within and between winter and summer to provide insight into controls on characteristic seasonal chemistry patterns at two mid-Appalachian sites with distinct geology (weatherable mafic and weather resistant siliciclastic). Acid neutralizing capacity (ANC) increased (1) with lower flow, in both seasons and (2) in summer, for all flow conditions. The compounding impacts resulted in a doubling of concentration from typical winter with high flow to summer with low flow at both sites. Base cation patterns tracked ANC at the mafic site, resulting in an ~ 60% increase of from winter with high flow to summer with low flow; distinctions between summer and winter contributed more to the seasonal pattern (72%) than changes in flow. Sulfate increased at the mafic site (1) with higher flow, in both seasons and (2) in winter, for all flow conditions, resulting in an ~ 50% increase from summer with low flow to winter with high flow; distinctions between winter and summer conditions and flow contributed similarly (40-60%) to the typical seasonal chemical pattern. The biogeochemical mechanism driving differences in stream chemistry between summer and winter for the same flow conditions is likely increased rates of natural acidification from elevated soil respiration in summer, resulting in greater bedrock weathering and sulfate adsorption. Findings highlight the significance and consistency of growing vs dormant season variations in temperature and biological activity in driving intra-annual patterns of stream solutes. This data set informs parameterization of hydro-biogeochemical models of stream chemistry in a changing climate at a biologically relevant, seasonal, timescale.
Microbial nitrogen transformations in tundra soil depend on interactive effects of seasonality and plant functional types
Koranda M and Michelsen A
Nitrogen (N) cycling in organic tundra soil is characterised by pronounced seasonal dynamics and strong influence of the dominant plant functional types. Such patterns in soil N-cycling have mostly been investigated by the analysis of soil N-pools and net N mineralisation rates, which, however, yield little information on soil N-fluxes. In this study we investigated microbial gross N-transformations, as well as concentrations of plant available N-forms in soils under two dominant plant functional types in tundra heath, dwarf shrubs and mosses, in subarctic Northern Sweden. We collected organic soil under three dwarf shrub species of distinct growth form and three moss species in early and late growing season. Our results showed that moss sites were characterised by significantly higher microbial N-cycling rates and soil N-availability than shrub sites. Protein depolymerisation, the greatest soil N-flux, as well as gross nitrification rates generally did not vary significantly between early and late growing season, whereas gross N mineralisation rates and inorganic N availability markedly dropped in late summer at most sites. The magnitude of the seasonal changes in N-cycling, however, clearly differed among plant functional types, indicating interactive effects of seasonality and plant species on soil N-cycling. Our study highlights that the spatial variation and seasonal dynamics of microbial N transformations and soil N availability in tundra heath are intimately linked with the distinct influence of plant functional types on soil microbial activity and the plant species-specific patterns of nutrient uptake and carbon assimilation. This suggests potential strong impacts of future global change-induced shifts in plant community composition on soil N-cycling in tundra ecosystems.
Climate displaces deposition as dominant driver of dissolved organic carbon concentrations in historically acidified lakes
Herreid AM, Fazekas HM, Nelson SJ, Wymore AS, Murray D, Varner RK and McDowell WH
Climate and atmospheric deposition interact with watershed properties to drive dissolved organic carbon (DOC) concentrations in lakes. Because drivers of DOC concentration are inter-related and interact, it is challenging to assign a single dominant driver to changes in lake DOC concentration across spatiotemporal scales. Leveraging forty years of data across sixteen lakes, we used structural equation modeling to show that the impact of climate, as moderated by watershed characteristics, has become more dominant in recent decades, superseding the influence of sulfate deposition that was observed in the 1980s. An increased percentage of winter precipitation falling as rain was associated with elevated spring DOC concentrations, suggesting a mechanistic coupling between climate and DOC increases that will persist in coming decades as northern latitudes continue to warm. Drainage lakes situated in watersheds with fine-textured, deep soils and larger watershed areas exhibit greater variability in lake DOC concentrations compared to both seepage and drainage lakes with coarser, shallower soils, and smaller watershed areas. Capturing the spatial variability in interactions between climatic impacts and localized watershed characteristics is crucial for forecasting lentic carbon and nutrient dynamics, with implications for lake ecology and drinking water quality.
Microbial responses to soil cooling might explain increases in microbial biomass in winter
Schnecker J, Spiegel F, Li Y, Richter A, Sandén T, Spiegel H, Zechmeister-Boltenstern S and Fuchslueger L
In temperate, boreal and arctic soil systems, microbial biomass often increases during winter and decreases again in spring. This build-up and release of microbial carbon could potentially lead to a stabilization of soil carbon during winter times. Whether this increase is caused by changes in microbial physiology, in community composition, or by changed substrate allocation within microbes or communities is unclear. In a laboratory incubation study, we looked into microbial respiration and growth, as well as microbial glucose uptake and carbon resource partitioning in response to cooling. Soils taken from a temperate beech forest and temperate cropland system in October 2020, were cooled down from field temperature of 11 °C to 1 °C. We determined microbial growth using O-incorporation into DNA after the first two days of cooling and after an acclimation phase of 9 days; in addition, we traced C-labelled glucose into microbial biomass, CO respired from the soil, and into microbial phospholipid fatty acids (PLFAs). Our results show that the studied soil microbial communities responded strongly to soil cooling. The O data showed that growth and cell division were reduced when soils were cooled from 11 to 1 °C. Total respiration was also reduced but glucose uptake and glucose-derived respiration were unchanged. We found that microbes increased the investment of glucose-derived carbon in unsaturated phospholipid fatty acids at colder temperatures. Since unsaturated fatty acids retain fluidity at lower temperatures compared to saturated fatty acids, this could be interpreted as a precaution to reduced temperatures. Together with the maintained glucose uptake and reduced cell division, our findings show an immediate response of soil microorganisms to soil cooling, potentially to prepare for freezing events. The discrepancy between C uptake and cell division could explain previously observed high microbial biomass carbon in temperate soils in winter.
Neotropical ostracode oxygen and carbon isotope signatures: implications for calcification conditions
Wrozyna C, Meyer J, Dietzel M and Piller WE
Calcitic valves of non-marine ostracodes are important geochemical archives. Investigations of the relationship between the ranges of oxygen and carbon isotope values of modern ostracode populations and their host water provide important information on local or regional conditions and influences. Here we present the first δO and δC of the freshwater ostracode species along with the isotopic composition of the waters in which the ostracodes calcified, δD, δO, δC values-covering a large geographical range (Florida to Brazil). With this data we extended a newly developed approach based on the estimation of δO values of monthly equilibrium calcites as references for the interpretation of δO values. The expected apparent oxygen isotope fractionation between CaCO and HO is correlated with temperature with smaller values occurring at higher temperatures as valid at isotope equilibrium (δO_). Uncertainties about the expected equilibrium calcites derive from incomplete knowledge of high-frequency variations of the water bodies caused by interplay of mixing, evaporation, and temperature. Coincidence between δO and δO_ is restricted to few months indicating a seasonal calcification of . There is a characteristic pattern in its difference between mean δO and δO_ which implies that provides a synchronous life cycle in its geographical range with two calcification periods in spring (May, June) and autumn (October). This ubiquitous life cycle of in the entire study area is considered to be phylogenetically inherited. It might have originally been adapted to environmental conditions but has been conserved during the migration and radiation of the group over the Neotropical realm.
Dissolved organic matter transformations in a freshwater rivermouth
Pearce NJT, Larson JH, Evans MA, Bailey SW, Frost PC, James WF and Xenopoulos MA
River-to-lake transitional areas are biogeochemically active ecosystems that can alter the amount and composition of dissolved organic matter (DOM) as it moves through the aquatic continuum. However, few studies have directly measured carbon processing and assessed the carbon budget of freshwater rivermouths. We compiled measurements of dissolved organic carbon (DOC) and DOM in several water column (light and dark) and sediment incubation experiments conducted in the mouth of the Fox river (Fox rivermouth) upstream from Green Bay, Lake Michigan. Despite variation in the direction of DOC fluxes from sediments, we found that the Fox rivermouth was a net sink of DOC where water column DOC mineralization outweighed the release of DOC from sediments at the rivermouth scale. Although we found DOM composition also changed during our experiments, alterations in DOM optical properties were largely independent of the direction of sediment DOC fluxes. We found a consistent decrease in humic-like and fulvic-like terrestrial DOM and a consistent increase in the overall microbial composition of rivermouth DOM during our incubations. Moreover, greater ambient total dissolved phosphorus concentrations were positively associated with the consumption of terrestrial humic-like, microbial protein-like, and more recently derived DOM but had no effect on bulk DOC in the water column. Unexplained variation indicates that other environmental controls and water column processes affect the processing of DOM in this rivermouth. Nonetheless, the Fox rivermouth appears capable of substantial DOM transformation with implications for the composition of DOM entering Lake Michigan.
Soil phosphorus status and P nutrition strategies of European beech forests on carbonate compared to silicate parent material
Prietzel J, Krüger J, Kaiser K, Amelung W, Bauke SL, Dippold MA, Kandeler E, Klysubun W, Lewandowski H, Löppmann S, Luster J, Marhan S, Puhlmann H, Schmitt M, Siegenthaler MB, Siemens J, Spielvogel S, Willbold S, Wolff J and Lang F
Sustainable forest management requires understanding of ecosystem phosphorus (P) cycling. Lang et al. (2017) [ https://doi.org/10.1007/s10533-017-0375-0] introduced the concept of P-acquiring P-recycling nutrition strategies for European beech () forests on silicate parent material, and demonstrated a change from P-acquiring to P-recycling nutrition from P-rich to P-poor sites. The present study extends this silicate rock-based assessment to forest sites with soils formed from carbonate bedrock. For all sites, it presents a large set of general soil and bedrock chemistry data. It thoroughly describes the soil P status and generates a comprehensive concept on forest ecosystem P nutrition covering the majority of Central European forest soils. For this purpose, an Ecosystem P Nutrition Index ( ) was developed, which enabled the comparison of forest P nutrition strategies at the carbonate sites in our study among each other and also with those of the silicate sites investigated by Lang et al. (2017). The P status of forest soils on carbonate substrates was characterized by low soil P stocks and a large fraction of organic Ca-bound P (probably largely Ca phytate) during early stages of pedogenesis. Soil P stocks, particularly those in the mineral soil and of inorganic P forms, including Al- and Fe-bound P, became more abundant with progressing pedogenesis and accumulation of carbonate rock dissolution residue. Phosphorus-rich impure, silicate-enriched carbonate bedrock promoted the accumulation of dissolution residue and supported larger soil P stocks, mainly bound to Fe and Al minerals. In carbonate-derived soils, only low P amounts were bioavailable during early stages of pedogenesis, and, similar to P-poor silicate sites, P nutrition of beech forests depended on tight (re)cycling of P bound in forest floor soil organic matter (SOM). In contrast to P-poor silicate sites, where the ecosystem P nutrition strategy is direct biotic recycling of SOM-bound organic P, recycling during early stages of pedogenesis on carbonate substrates also involves the dissolution of stable Ca-P precipitates formed from phosphate released during SOM decomposition. In contrast to silicate sites, progressing pedogenesis and accumulation of P-enriched carbonate bedrock dissolution residue at the carbonate sites promote again P-acquiring mechanisms for ecosystem P nutrition.
Transitions in nitrogen and organic matter form and concentration correspond to bacterial population dynamics in a hypoxic urban estuary
Humphries GE, Espinosa JI, Ambrosone M, Ayala ZR, Tzortziou M, Goes JI and Greenfield DI
Nitrogen (N) inputs to developed coastlines are linked with multiple ecosystem and socio-economic impacts worldwide such as algal blooms, habitat/resource deterioration, and hypoxia. This study investigated the microbial and biogeochemical processes associated with recurrent, seasonal bottom-water hypoxia in an urban estuary, western Long Island Sound (WLIS), that receives high N inputs. A 2-year (2020-2021) field study spanned two hypoxia events and entailed surface and bottom depth water sampling for dissolved nutrients as inorganic N (DIN; ammonia-N and nitrite + nitrate (N + N)), organic N, orthophosphate, organic carbon (DOC), as well as chlorophyll and bacterial abundances. Physical water quality data were obtained from concurrent conductivity, temperature, and depth casts. Results showed that dissolved organic matter was highest at the most-hypoxic locations, DOC was negatively and significantly correlated with bottom-water dissolved oxygen (Pearson's  = -0.53,  = 0.05), and ammonia-N was the dominant DIN form pre-hypoxia before declining throughout hypoxia. N + N concentrations showed the reverse, being minimal pre-hypoxia then increasing during and following hypoxia, indicating that ammonia oxidation likely contributed to the switch in dominant DIN forms and is a key pathway in WLIS water column nitrification. Similarly, at the most hypoxic sampling site, bottom depth bacteria concentrations ranged ~ 1.8 × 10-1.1 × 10 cells ml pre-hypoxia, declined throughout hypoxia, and were positively and significantly correlated (Pearson's  = 0.57;  = 0.03) with ammonia-N, confirming that hypoxia influences N-cycling within LIS. These findings provide novel insight to feedbacks between major biogeochemical (N and C) cycles and hypoxia in urban estuaries.
A holistic framework integrating plant-microbe-mineral regulation of soil bioavailable nitrogen
Daly AB, Jilling A, Bowles TM, Buchkowski RW, Frey SD, Kallenbach CM, Keiluweit M, Mooshammer M, Schimel JP and Grandy AS
Soil organic nitrogen (N) is a critical resource for plants and microbes, but the processes that govern its cycle are not well-described. To promote a holistic understanding of soil N dynamics, we need an integrated model that links soil organic matter (SOM) cycling to bioavailable N in both unmanaged and managed landscapes, including agroecosystems. We present a framework that unifies recent conceptual advances in our understanding of three critical steps in bioavailable N cycling: organic N (ON) depolymerization and solubilization; bioavailable N sorption and desorption on mineral surfaces; and microbial ON turnover including assimilation, mineralization, and the recycling of microbial products. Consideration of the balance between these processes provides insight into the sources, sinks, and flux rates of bioavailable N. By accounting for interactions among the biological, physical, and chemical controls over ON and its availability to plants and microbes, our conceptual model unifies complex mechanisms of ON transformation in a concrete conceptual framework that is amenable to experimental testing and translates into ideas for new management practices. This framework will allow researchers and practitioners to use common measurements of particulate organic matter (POM) and mineral-associated organic matter (MAOM) to design strategic organic N-cycle interventions that optimize ecosystem productivity and minimize environmental N loss.
Do coastal salt mudflats (sabkhas) contribute to the blue carbon sequestration?
Elsayed H, Al Disi ZA, Naja K, Strakhov I, Mundle SOC, Al-Kuwari HAS, Sadooni F, Diloreto Z, Al-Khayat JAA and Dittrich M
Blue carbon represents the organic carbon retained in marine coastal ecosystems. (an Arabic for "mudflats"), formed in tidal environments under arid conditions, have been proposed to be capable of carbon sequestrating. Despite the growing understanding of the critical role of blue carbon ecosystems, there is a current dispute about whether sabkhas around the Persian Gulf can contribute to carbon retention as a blue carbon ecosystem. The arguments often lack data on a critical contributor, inorganic carbon in the form of carbonates, which can drive the net carbon exchange with the atmosphere. In this study we inventory organic and inorganic carbon retention capacity in two contrasting sabkhas of the Qatar Peninsula: carbonaceous Dohat Faishakh and siliciclastic Khor Al-Adaid. Despite the differences in organic carbon stock between the two sabkhas, the Dohat Faishakh sabkha has higher (37.17 ± 0.81 Mg C ha) than it is in the Khor Al-Adaid sabkha (13.75 ± 0.38 Mg C ha) for 0. 44 m sediment depth, the organic carbon retained in sabkhas is similar to those reported for mangroves and salt marshes. Notably, calculated CO net sequestration indicated that both sabkhas evade CO into the atmosphere. Thus, carbonate formation negated organic carbon accumulation in carbonaceous sabkha. Consequently, for proper evaluation of sabkhas as a blue carbon ecosystem, an inorganic carbon analysis, especially of carbonate formation, is inevitable. Considering only organic carbon stock may ay overestimate carbon sequestration capacity.