Personalized Medicine

Technological advances in clinical individualized medication for cancer therapy: from genes to whole organism
Kai J, Liu X, Wu M, Liu P, Lin M, Yang H and Zhao Q
Efforts have been made to leverage technology to accurately identify tumor characteristics and predict how each cancer patient may respond to medications. This involves collecting data from various sources such as genomic data, histological information, functional drug profiling, and drug metabolism using techniques like polymerase chain reaction, sanger sequencing, next-generation sequencing, fluorescence in situ hybridization, immunohistochemistry staining, patient-derived tumor xenograft models, patient-derived organoid models, and therapeutic drug monitoring. The utilization of diverse detection technologies in clinical practice has made "individualized treatment" possible, but the desired level of accuracy has not been fully attained yet. Here, we briefly summarize the conventional and state-of-the-art technologies contributing to individualized medication in clinical settings, aiming to explore therapy options enhancing clinical outcomes.
Genetic and non-genetic factors influencing the therapeutic response of valproic acid in pediatric epileptic patients
Wu C, Zheng J, Pan Y, Tao R, Zhong Z, Qian C, Liang H and Wu H
Considerable inter-individual variability in the efficacy of valproic acid (VPA) has been reported, with approximately 20-45% of patients failing to achieve satisfactory seizure control after VPA monotherapy. The aim of this study was to investigate the influence of non-genetic and genetic factors on 12-month VPA-response in a cohort of 194 pediatric patients.
Pharmacogenomics education in China and the United States: advancing personalized medicine
Wang Q, Sun S, Zhang W, Cao D and Jin Y
Pharmacogenomics (PGx), an integral part of functional genomics and molecular pharmacology, has evolved significantly over the past decade. Our study reveals that PGx education in China and the United States has made substantial progress, with a particular emphasis on integrating PGx into medical curricula and clinical practice, leading to improved therapeutic strategies and patient outcomes. Consequently, both China and the United States are dedicated to fostering advancements in PGx education. This paper reviews PGx education in these two countries, highlighting its importance and providing an in-depth look at the current status and challenges within universities and clinical settings. Furthermore, it offers recommendations for advancing PGx education and contemplates future trends in both nations.
Individualized psychiatric care: integration of therapeutic drug monitoring, pharmacogenomics, and biomarkers
Salatin S, Shafiee-Kandjani AR, Hamidi S, Amirfiroozi A and Kalejahi P
Personalized treatment optimization considers individual clinical, genetic, and environmental factors influencing drug efficacy and tolerability. As evidence accumulates, these approaches may become increasingly integrated into standard psychiatric care, potentially transforming the treatment landscape for mental health disorders. While personalized treatment optimization shows promise in enhancing therapeutic outcomes and minimizing adverse effects, further research is needed to establish its clinical utility and cost-effectiveness across various psychiatric disorders. This review examines the potential utility of personalized treatment optimization in psychiatry, addressing the challenge of suboptimal effectiveness and variable patient responses to psychiatric medications. It explores how therapeutic drug monitoring, pharmacogenomics, and biomarker testing can be used to individualize and optimize pharmacotherapy for mental disorders such as depression, bipolar disorder, and schizophrenia.
Development of a computer-based tool to obtain a family health history in Vietnam
Tieu LB, Nguyen VN, Tran PG, Truong HM, Nguyen TT, Huy Nguyen VQ, Thi Ha TM, Nguyen NH, Lu YT, Tran HX, Nguyen QT, Nguyen QN, Le TT, Truong VH, Bui MB, Truong DK, Do TT, Nguyen HN, Quan DC and Tang HS
Family health history (FHH) is central to human genomic profiling construction; however, there is no protocol for documenting FHH in a pedigree format in Vietnam. A "Gia Su Suc Khoe" (GSSK) tool was developed to create a user-friendly interface for collecting FHH and offering diseases' risk assessment. A tool was described (https://giasusuckhoe.vn/) with good feedback from genetic counselors and family-medicine doctors. Among 20 surveys, 100% of respondents noted that the report accurately reflected their FHH and were satisfied with the tool's display. About 74% of familial conditions were covered. Overall, all constructive feedback has been adapted into the updated version. Gia Su Suc Khoe has the potential to significantly improve healthcare delivery and outcomes in Vietnam.
Association between IL-6, miRNA-146a, MALAT1 genetic polymorphisms and risk of rheumatoid arthritis
Ali YB, Hasan NM, El-Maadawy EA, Bassyouni IH, El-Shahat M and Talaat RM
This study aimed to investigate the associations between single nucleotide polymorphisms (SNPs) of (-174G/C), (rs2910164C/G) and (rs619586A/G) and susceptibility to rheumatoid arthritis (RA) in Egyptians. SNPs were genotyped in 101 RA patients and 104 controls. Expression levels were evaluated either by Enzyme-linked immunosorbent assay (ELISA) for IL-6 or quantitative real-time PCR (qRT-PCR) for miR-146a and MALAT1. GC (OR = 3.422) genotype, IL-6-174 C allele (OR = 2.565), miR-146a (rs2910164) CG (OR = 2.190) and MALAT1 (rs619586) AA (OR = 4.125) genotypes and A allele (OR = 6.122) could be considered as risk factors for RA. An increase in the expression of IL-6, miR-146a and MALAT1 was detected in RA patients, which was independent of any SNP. SNPs of IL-6, miR-146a and MALAT1were linked to RA predisposition in Egyptians.
Precision medicine activities and opportunities for shaping maternal and neonatal health in Qatar
Al-Dewik N, Abuarja T, Younes S, Nasrallah G, Alsharshani M, Ibrahim FE, Samara M, Farrell T, Abdulrouf PV, Qoronfleh MW and Al Rifai H
Precision Medicine (PM) is a transformative clinical medicine strategy that aims to revolutionize healthcare by leveraging biological information and biomarkers. In the context of maternal and neonatal health, PM enables personalized care from preconception through the postnatal period. Qatar has emerged as a key player in PM research, with dedicated programs driving advancements and translating cutting-edge research into clinical applications. This article delves into neonatal and maternal health in Qatar, emphasizing PM programs and initiatives that have been implemented. It also features noteworthy clinical cases that demonstrate the effectiveness of precision interventions. Furthermore, the article highlights the role of pharmacogenomics in addressing various maternal health conditions. The review further explores potential advancements in the application of PM in maternal and neonatal healthcare in Qatar.
Impact of  rs7554283 on susceptibility to high-altitude pulmonary edema in the Chinese population
Xu S, Li X, Li X, Ma R, Zhang H, Hu B, He X and Jin T
MIR137 host gene (MIR137HG) variants were involved in a variety of diseases, but its role in high-altitude pulmonary edema (HAPE) has not been reported. The study aimed to study the association between MIR137HG single-nucleotide polymorphisms and HAPE risk in the Chinese population. Based on the Plink software, odds ratio and 95% confidence interval were used for logistic regression analysis to evaluate the association between MIR137HG polymorphisms and the risk of HAPE. We discovered that MIR137HG rs7554283 was associated with a reduced risk of HAPE. In both individuals older than 32 years and those younger than 32 years, we observed that rs7554283 was associated with a decreased risk of HAPE. In conclusion, MIR137HG rs7554283 may be related to a reduced susceptibility to HAPE in the Chinese population. These results provide a theoretical basis for the role of MIR137HG single-nucleotide polymorphisms in the occurrence of HAPE.
Efficacy and tolerability of capmatinib in a very elderly patient with metastatic NSCLC harboring a exon 14 mutation
Conci N, Marchiori V, Federico AD, Giglio A, Sperandi F, Melotti B and Gelsomino F
We report the case of an 87-year-old female patient who was diagnosed with metastatic non-small-cell lung cancer harboring exon 14 skipping mutation ( ex14) and PD-L1 expression of 60%. A first-line treatment with atezolizumab was started with primary resistance. Then, a second-line treatment with capmatinib, a selective type Ib MET tyrosine kinase inhibitor, was started, achieving a partial response. The patient is still alive and on treatment with capmatinib 300 mg twice daily after 20 months, with a good tolerability and no evidence of disease progression.In summary, our patient experienced a long-lasting response (>18 months) with capmatinib as second-line treatment. Further analyses evaluating the efficacy and tolerability of MET tyrosine kinase inhibitors are warranted, especially in the elderly, a non-small-cell lung cancer population whose tumors could more frequently harbor ex14 mutation.
European survey: citizens' attitudes on personalized medicine, genetic testing and health data sharing - design and delivery
Causio FA, Beccia F, Kreeftenberg LL, Calabrò GE, Pastorino R, Boccia S and El CV
In the transformative landscape of healthcare, personalized medicine emerges as a pivotal shift, harnessing genetic, environmental and lifestyle data to tailor medical treatments for enhanced outcomes and cost efficiency. Central to its success is public engagement and consent to share health data amidst rising data privacy concerns. To investigate European public opinion on this paradigm, we executed a comprehensive cross-sectional survey to capture the general public's views on personalized medicine and data-sharing modalities, including digital tools and electronic records. The survey was distributed in eight major European Union countries and the results aim at guiding future policymaking and trust-building measures for secure health data exchange. This article delineates our methodological approach, whereby survey findings will be expounded in subsequent publications.
Lung cancer, platinum analog-based frontline treatment and pharmacogenetic limitations
Saqib M, Din ZS, Zafar S, Munawar N, Nawaz R, Ahmed S and Hamdard MH
Lung cancer has the highest mortality rate among all the highly prevalent neoplasia globally. The major concern with its frontline treatment-cisplatin, is the rapid progression of chemoresistance and multi-organ-based toxicities including hearing loss and tinnitus, nephrotoxicity, hepatotoxicity and myelosuppression including anemia and neutropenia. In this review, studies concluding the association of single nucleotide polymorphisms (SNP) in disparate genes with aforementioned toxicity points are summarized to observe the pharmacogenomic pattern. Especially, in , , , , , , , , , , , , , and genes appear to be associated with the therapeutic response and/or adverse effects of cisplatin. We recommend utilizing this information to minimize the risk of treatment failure due to chemoresistance and adverse effects on other organs.
Efficacy of trastuzumab deruxtecan in treating HER2-low breast cancer leptomeningeal metastasis: a case report
Kharel Z, Stanford S, Hemminger LE, Schmidt T, Hardy SJ, Zittel J, Mohile NA and Dhakal A
We report the efficacy of trastuzumab deruxtecan (T-DXd) in treating human epidermal growth factor receptor 2 (HER2) low, type ID leptomeningeal breast cancer (LMD) (with positive cerebrospinal fluid [CSF] cytology and hydrocephalus as the only abnormal imaging finding) and the diagnostic and monitoring utilization of a novel microfluidic platform called CNSide™. Breast cancer LMD is associated with poor prognosis, and effective treatments are lacking. Our case highlights two crucial aspects related to the treatment and monitoring of breast cancer LMD. First, T-DXd was chosen based on immunocytochemistry (IHC) data from CSF malignant cells and follow-up revealed effectiveness of T-DXd in treating HER2-low LMD. While the efficacy of T-DXd has been established in treating metastatic HER2-low breast cancer, our case represents, to our knowledge, the first demonstration of T-DXd's effectiveness in HER2-low breast cancer LMD. Second, since this is type 1D LMD with absence of unequivocal measurable radiological disease in both the central nervous system (CNS) and extra-CNS, we employed a novel microfluidic CSF assay to monitor disease response. This novel assay outperformed standard CSF cytology in our case. There is an urgent need to develop CSF tumor cell assessment tool that surpasses the capabilities of conventional CSF cytology.
Association between , , , and gene polymorphisms and breast cancer risk
Asadi A, Barati F, Nakhaee A, Jahantigh D, Hashemi SM, Taheri M and Bahari G
In this study, we examined the polymorphisms of (rs13252298, rs1456315), (rs4848320) (rs7158663), (rs7853346) genes in BC patients and compared it with healthy individuals in an Iranian population.
Identification of novel variants of and genes in xeroderma pigmentosum patients in Vietnam
Anh Luong TL, Hoang TL, Tran DP, Le TM, Tran H, Ho PT, Hoang HN, Giang H, Vu DL, Dinh NH, Nguyen MT and Nguyen HS
Xeroderma pigmentosum (XP) disorder is recognized as a genetic condition inherited by autosomal recessive fashion. XP results from a defective DNA repair mechanism that significantly increases skin cancer risk. Fifteen Vietnamese patients were investigated with typical clinical manifestations of XP. Eight XP genes ( to and /) were sequenced using peripheral blood samples. Overall, three novel variants on the and genes were detected in members of two families. One novel missense variant c.388A>G (p.R130G) of was found in three patients with XP group A, two novel variants: c.680G>A (p.C227Y) and c.1652dupC (p.Gln553Profs*8) of in one patient with XP group F/G. Our study contributes to the recognition of new mutations in XP patients which have not been reported in Human Gene Mutation Database (HGMD).
The effect of gene polymorphisms on preeclampsia susceptibility: a meta-analysis study
Salimi S, Mohammadpour-Gharehbagh A, Hedayat M, Galavi H and Harati-Sadegh M
The authors designed a meta-analysis to find a comprehensive result of the impact of polymorphisms on preeclampsia (PE) susceptibility. The online databases PubMed, Scopus, and Google Scholar were employed for the purpose of literature search. Data analysis was conducted using STATA (ver. 12.0) and MetaGenyo web tool. The findings showed that the rs10887800 polymorphism could increase risk of PE in allelic, codominant heterozygous and dominant genetic models. In addition, the analysis indicated that the rs2576178 polymorphism was associated with higher risk of PE in allelic, codominant homozygous, dominant, and recessive models. The findings of meta-analysis showed that the rs10887800 and rs2576178 polymorphisms could increase risk of PE in several genetic models.
Improving resource allocation in the precision medicine Era: a simulation-based approach using R
Kamal M, Nagy M and Hassanain O
The application of personalized medicine in developing countries is a major challenge, especially for those with poor economic status. A critical factor in improving the application of personalized medicine is the efficient allocation of resources. In healthcare systems, optimizing resource allocation without compromising patient care is paramount. This tutorial employs a simulation-based approach to evaluate the efficiency of bed allocation within a hospital setting. Utilizing a patient arrival model with an exponential distribution, we simulated patient trajectories to examine system bottlenecks, particularly focusing on waiting times. Initial simulations painted a scenario of an 'unstable' system, where waiting times and queue lengths surged due to the limited number of available beds. This research offers insights for hospital management on resource optimization leading to improved patient care.
The rs2275738 variant of the adiponectin receptor 1 gene is associated with biopsy-proven nonalcoholic fatty liver disease
Rostami M, Mahmoudi T, Ardalani A, Mashaollahi A, Zafarjafarzadeh N, Mahban A, Roshani KB, Ghasemi F, Ourang Z, Dehghanitafti A, Kaboli HS, Rezamand G, Asadi A, Dabiri R, Nobakht H, Tabaeian SP and Zali MR
Nonalcoholic fatty liver disease (NAFLD) is a significant health issue worldwide. This study investigated the effect of the adiponectin receptor 1 gene () polymorphism on susceptibility to NAFLD. Data from 330 participants, including 165 biopsy-proven NAFLD patients and 165 healthy controls, were collected. The PCR-RFLP method was used to detect the genotypes of rs2275738 or T-106C variant. The "CC" genotype of the rs2275738 polymorphism, compared with the "TT" genotype and the "C" allele, compared with the "T" allele, are markers of increased NAFLD susceptibility ( = 0.018; OR = 2.07, 95% CI = 1.43-2.01 and  = 0.041; OR = 1.52, 95% CI = 1.24-2.35, respectively). This research suggests, for the first time, that the rs2275738 "CC" genotype is associated with a 107% increased risk for biopsy-proven NAFLD.
Optimizing vancomycin therapeutic drug monitoring compliance in pediatric oncology: towards personalized medication management
Mohamed RG, Saber R, Hussein MA, Shalaby A, Yasser N, Kamal S, Shalaby L and Nagy M
Vancomycin, a crucial treatment for Gram-positive bacteria, necessitates therapeutic drug monitoring (TDM) to prevent treatment failures. We investigated the healthcare professional's compliance toward TDM of vancomycin recommendations and follow-up levels. We collected data from 485 patients who received vancomycin in the Children's Cancer Hospital Egypt 57357 medical records system (Cerner) over 4 months, from January to April 2020. Our data shows that only 54% of patients had TDM requests from healthcare professionals for the total patients who received vancomycin treatment. The healthcare professionals' compliance with the recommendations was 91.7%, while the follow-up levels were 66.7%. While overall adherence to recommendations is strong, enhancing compliance with follow-up levels remains a priority for improvement.
Introduction of a single-nucleotide variant, rs16851030, into the gene increased cellular susceptibility to hypoxia
Wong PK, Syafruddin SE, Cheah FC, Azmi N, Ng PY and Chua EW
Rs16851030, a single-nucleotide variant located in the 3'-untranslated region of the gene, has been proposed as a potential marker of caffeine sensitivity in apnea of prematurity. Besides, it is associated with aspirin-induced asthma and the development of acute chest syndrome. However, its functional significance is still unconfirmed. This study aimed to elucidate the functional impact of rs16851030 by using CRISPR/Cas9 approach to induce the DNA variant and attendant physiological changes. Rs16851030 was introduced into HEK293 cells via homology-directed repair (HDR). Edited cells were fluorescence-enriched, sorted, isolated, and expanded into single-cell-derived clones. The edit was confirmed by Sanger sequencing. RNA sequencing was used to analyze affected pathways. Rs16851030-mutant cells showed increased susceptibility to hypoxia, a condition related to apnea of prematurity. After 24 h of hypoxia, the viability of mutant clones 1 and 2 was low compared with wild-type cells (75.45% and 74.47% vs. 96.34%). RNA sequencing revealed transcriptomic changes linked to this increased vulnerability. Rs16851030 impairs cellular resistance to hypoxia, suggesting its role in conditions like apnea of prematurity. Further research should investigate the molecular mechanisms and transcriptomic alterations caused by rs16851030 under hypoxic conditions.
Preliminary study of identified novel susceptibility loci for HAPE risk in a Chinese male Han population
Zhao B, Liu C, Qi Y, Zhang T, Wang Y, He X, Wang L and Jin T
High altitude pulmonary edema (HAPE) is a life-threatening form of non-cardiogenic pulmonary edema. In recent years, association studies have become the main method for identifying HAPE genetic loci. A genome-wide association study (GWAS) of HAPE risk-associated loci was performed in Chinese male Han individuals (164 HAPE cases and 189 healthy controls) by the Precision Medicine Diversity Array Chip with 2,771,835 loci (Applied Biosystems Axiom™). Eight overlapping candidate loci in , , and were finally selected. functional analyses displayed the PPI network, functional enrichment and signal pathways related to , , and . This study provides data supplements for HAPE susceptibility gene loci and new insights into HAPE susceptibility.
miR-559 rs58450758 polymorphism is associated with colorectal cancer risk and prognosis in Chinese Han population
Huang H, Xiao L, Xiao M, Chen K, Zheng W and Wu N
This research examined the correlation between miR-559 rs58450758 and the clinical pathological characteristics and prognosis of CRC. RT-qPCR was utilized to assess the miR-559 expression levels. Chi-square test was used to investigate the relationship between miR-559 and clinical features. The association between rs58450758 different genotypes and CRC risk, as well as clinical pathological parameters, was explored, utilizing logistic regression analysis and chi-square tests. The Cox regression model and Kaplan-Meier analysis evaluated overall survival in individuals with CRC. The miR-559 was down-regulated in CRC patients' serum. The expressions of miR-559 were significantly associated with tumor size, differentiation, TNM stage and lymph node metastasis. The rs58450758 TT genotype and T allele carriers were more prevalent among CRC patients. The rs58450758 polymorphism was notably linked to tumor size, differentiation, TNM stage and lymph node metastasis in CRC patients. Furthermore, CC genotype carriers exhibited a longer survival period than CT/TT genotypes within the CRC population. The miR-559 rs58450758 polymorphism exhibits promise as a potential biomarker for prognosticating the outcomes of CRC.