Optical reflectometric measurement of SARS-CoV-2 (COVID-19) RNA based on cationic cysteamine-capped gold nanoparticles
The coronavirus disease (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged as a major public health outbreak in late 2019 and was proclaimed a global pandemic in March 2020. A reflectometric-based RNA biosensor was developed by using cysteamine-stabilized gold nanoparticles (cysAuNPs) as the colorimetric probe for bioassay of COVID-19 RNA (SARS-CoV-2 RNA) sequence. The cysAuNPs aggregated in the presence of DNA probes via cationic and anionic electrostatic attraction between the positively charged cysteamine ligands and the negatively charged sugar-phosphate backbone of DNA, whilst in the presence of target RNAs, the specific recognition between DNA probes and targets depleted the electrostatic interaction between the DNA probes and cysAuNPs signal probe, leading to dispersed particles. This has rendered a remarkable shifting in the surface plasmon resonance (SPR) on the basis of visual color change of the RNA biosensor from red to purplish hue at the wavelength of 765 nm. Optical evaluation of SARS-CoV-2 RNA by means on reflectance transduction of the RNA biosensor based on cysAuNPs optical sensing probes demonstrated rapid response time of 30 min with high sensitivity, good linearity and high reproducibility across a COVID-19 RNA concentration range of 25 nM to 200 nM, and limit of detection (LOD) at 0.12 nM. qPCR amplification of SARS-CoV-2 viral RNA showed good agreement with the proposed RNA biosensor by using spiked RNA samples of the oropharyngeal swab from COVID-19 patients. Therefore, this assay is useful for rapid and early diagnosis of COVID-19 disease including asymptomatic carriers with low viral load even in the presence of co-infection with other viruses that manifest similar respiratory symptoms.
A single-film fiber optical sensor for simultaneous measurement of carbon dioxide and relative humidity
Colorimetric measurement is a versatile, low-cost method for bio-/chemical sensing and that has importance in biomedical applications. General carbon dioxide (CO) sensors based on colorimetric change of a pH indicator report only one parameter at a time and are cross-sensitive to relative humidity (RH). This work describes a novel optical fiber sensor with a thin film on the distal end of the fiber, combining colorimetric measurement and a white light Fabry-Pérot interferometer (FPI) for the simultaneous measurement of CO and RH. The CO sensitive dye ion-pair: thymol blue and tetramethylammonium hydroxide are encapsulated inside organically modified silica forming an extrinsic FPI cavity (refractive index of 1.501 ± 0.02 and thickness of 5.83 ± 0.09 μm). The sensor reversibly responds to 0-6% CO and 0-90% RH with negligible cross-sensitivity and allows measurement of both parameters simultaneously. A sensitivity of ∼0.19 nm/%RH is obtained for RH measurement based on the wavelength shift of the FPI and there is a polynomial correlation between the average intensity of selected wavelengths and the concentration of CO. The applicability of the sensor is demonstrated by measuring the CO and RH exhaled from human breath with a percent error of 3.1% and 2.2% respectively compared to a commercial datalogger. A simulation model is provided for the dye-encapsulated FPI sensor allowing simulation of spectra of sensors with different film thicknesses.
Open Source Remote Monitoring of Research Lasers
An open source remote monitoring system is designed and built to address the needs of researchers to provide basic illuminated visual indication of laser operation for university research laboratories that are equipped with multiple types of high-powered lasers and have limited financial resources. The 3D printed remote monitoring system selectively monitors either the total current running through a laser or a TTL shutter signal to wirelessly indicate at the laboratory entrances that a laser is in use. Several lasers can be monitored in a single room and each room entrance can have its own wireless laser activity indicator. The wireless feature eliminates the expense of in-wall wiring for the system. An emergency shut off switch is included as an optional attachment. This article describes the design of the readily deployed open source laser monitoring system, including how it was built and tested for integration into a microscopy research laboratory.
Customised structural, optical and antibacterial characteristics of cinnamon nanoclusters produced inside organic solvent using 532 nm Q-switched Nd:YAG-pulse laser ablation
Biomedical values of organic natural cinnamon that are buried in their bulk counterpart can be exposed and customised via nanosizing. Based on this factor, a new type of spherical cinnamon nanoclusters (Cin-NCs) were synthesised using eco-friendly nanosecond pulse laser ablation in liquid (PLAL) approach. As-grown nontoxic Cin-NCs suspended in the citric acid of pH 4.5 (acted as organic solvent) were characterised thoroughly to evaluate their structural, optical and bactericidal properties. The effects of various laser fluences (LF) at the fixed wavelength (532 nm) on the physiochemical properties of these Cin-NCs were determined. The FTIR spectra of the Cin-NCs displayed the symmetric-asymmetric stretching of the functional groups attached to the heterocyclic/cinnamaldehyde compounds. The HR-TEM image of the optimum sample revealed the nucleation of the crystalline spherical Cin-NCs with a mean diameter of approximately 10 ± 0.3 nm and lattice fringe spacing around 0.14 nm. In addition, the inhibition zone diameter (IZD) and optical density (OD) of the proposed Cin-NCs were measured to assess their antibacterial potency against the (IZD ≈ 24 mm) and (IZD ≈ 25 mm) bacterial strains. The strong UV absorption (in the range of 269 and 310 nm) shown by these NCs was established to be useful for the antibacterial drug development and food treatment.
Laser-assisted embedding of all-glass optical fiber sensors into bulk ceramics for high-temperature applications
We develop a laser-assisted sensor embedding process to embed all-glass optical fiber sensors into bulk ceramics for high-temperature applications. A specially designed two-step microchannel was fabricated on an AlO substrate for sensor embedment using a picosecond (ps) laser. An optical fiber Intrinsic Fabry-Perot Interferometer (IFPI) sensor was embedded at the bottom of the microchannel and covered by AlO slurry which was subsequently sintered by a CO laser. The sensor spectrum was in-situ monitored during the laser sintering process to ensure the survival of the sensor and optimize the laser sintering parameters. By testing in furnace through high temperature, the embedded optical fiber shows improved stability after CO laser sealing, resulting in the linear temperature response of the embedded optical fiber IFPI sensor. To improve the embedded IFPI sensor for thermal strain measurement, a dummy fiber was co-embedded with the sensing fiber to improve the mechanical bonding between the sensing fiber and the ceramic substrate so that the thermal strain of the ceramic substrate can apply on the sensing fiber. The response sensitivity, measurement repeatability and high-temperature long-term stability of the embedded optical fiber IFPI sensor were evaluated in this work.
A photoacoustic imaging method for in-situ monitoring of laser assisted ceramic additive manufacturing
We propose an in-situ monitoring method of laser assisted ceramic additive manufacturing (AM) fabrication process using photoacoustic (PA) imaging technique. This method is potentially very practical and of low cost, as it can be easily implemented with little modification to the original AM system. A major advantage of this method is that it does not require any complex or expensive component to be installed, just need a microphone to be setup near the work-piece and a data processing program to analyse the acoustic data. By collecting the photoacoustic wave that produced by the laser scanning during the AM process, a spectrogram of the acoustic signal can be generated using short-time Fourier transform (STFT). The PA signal can be extracted by specifying the modulation frequency of the laser in the spectrogram. Combining with the scanning position of the laser beam, the PA image of the layer under processing can be obtained. Detection of two kinds of defects (metal defect and dried paste defect) have been demonstrated. Although there are many other kinds of possible defects in additive manufacturing processes, this method could be a practical and low cost way to monitor most of them with proper choice of parameters of the laser and detection system. The parameters of the system that can influence the PA image quality have also been discussed.
High-speed bipolar phototransistors in a 180 nm CMOS process
Several high-speed pnp phototransistors built in a standard 180 nm CMOS process are presented. The phototransistors were implemented in sizes of 40×40 μm and 100×100 μm. Different base and emitter areas lead to different characteristics of the phototransistors. As starting material a p wafer with a p epitaxial layer on top was used. The phototransistors were optically characterized at wavelengths of 410, 675 and 850 nm. Bandwidths up to 92 MHz and dynamic responsivities up to 2.95 A/W were achieved. Evaluating the results, we can say that the presented phototransistors are well suited for high speed photosensitive optical applications where inherent amplification is needed. Further on, the standard silicon CMOS implementation opens the possibility for cheap integration of integrated optoelectronic circuits. Possible applications for the presented phototransistors are low cost high speed image sensors, opto-couplers, etc.
Depth of focus enhancement of a modified imaging quasi-fractal zone plate
We propose a new parameter for optimization of foci distribution of conventional fractal zone plates (FZPs) with a greater depth of focus (DOF) in imaging. Numerical simulations of DOF distribution on axis directions indicate that the values of DOF can be extended by a factor of 1.5 or more by a modified quasi-FZP. In experiments, we employ a simple object-lens-image-plane arrangement to pick up images at various positions within the DOF of a conventional FZP and a quasi-FZP, respectively. Experimental results show that the parameter improves foci distribution of FZPs in good agreement with theoretical predictions.
Three-dimensional non-destructive optical evaluation of laser-processing performance using optical coherence tomography
We demonstrate the use of optical coherence tomography (OCT) as a non-destructive diagnostic tool for evaluating laser-processing performance by imaging the features of a pit and a rim. A pit formed on a material at different laser-processing conditions is imaged using both a conventional scanning electron microscope (SEM) and OCT. Then using corresponding images, the geometrical characteristics of the pit are analyzed and compared. From the results, we could verify the feasibility and the potential of the application of OCT to the monitoring of the laser-processing performance.