National Science Review

Understanding the local environment in electrocatalysis
Chen C, Zheng Y and Qiao SZ
This perspective summarizes the understanding about the local reaction environment in the electrocatalysis and underscores the influence of local environment due to its special location.
Integrated detrital rutile and detrital zircon ages: a new perspective on the tectonic evolution of South China
Zou H, Li H, Li Z, Wang D, Safonova I, Cao H, Jin X, Chen H and Huang C
Paleogeographic reconstructions are of key importance for understanding the history of continental breakups and amalgamations during Earth's history. A special case is the history of the Asian continent, which, compared to other continents, consists of several large cratons and numerous smaller continental blocks. The history of the assembly of South China remains controversial in terms of the timing, Late Neoproterozoic or Early Paleozoic, and the participating continental blocks, e.g. Yangtze, Cathaysia, India and Australia. Detrital rutile U-Pb dating has significant potential with regard to deciphering tectonic settings as rutile frequently crystallizes during orogenic events associated with the processes of collision and subduction. Detrital zircon U-Pb dating is a perfect instrument for identifying the provenance characteristics and age characteristics of sedimentary sources. An integration of these two methods of dating offers better opportunities for reconstructing tectonic settings. This paper presents a first attempt to reconstruct the Neoproterozoic to Early Paleozoic tectonic history and paleogeography of the whole South China based on U-Pb geochronology of rutile and zircon and Hf-in-zircon isotopes from Lower Jurassic Baitianba Formation sedimentary rocks of the western margin of the Yangtze Block, a major part of South China. Our obtained integrated U-Pb rutile and zircon age data show three main age populations of 960-940 Ma, 630-610 Ma and 530-520 Ma. The new U-Pb detrital rutile and zircon ages, compared with former data from Gondwana and Australia, suggest that Yangtze amalgamated with Cathaysia to form South China during the Sibao orogeny at 960-940 Ma. The detrital rutile and zircons of the new 630-610 Ma age group could have been delivered from western Australia during the Late Neoproterozoic to Cambrian Paterson-Petermann orogeny. The abundant 530-520 Ma detrital rutile and zircon ages fit well with the coeval zircon age populations recorded in Gondwana-derived terranes, like India and Indochina.
Leaping plastic thermoelectrics through multi-heterojunction design
Lü JT
Opportunities and challenges of diffusion models for generative AI
Chen M, Mei S, Fan J and Wang M
Diffusion models, a powerful and universal generative artificial intelligence technology, have achieved tremendous success and opened up new possibilities in diverse applications. In these applications, diffusion models provide flexible high-dimensional data modeling, and act as a sampler for generating new samples under active control towards task-desired properties. Despite the significant empirical success, theoretical underpinnings of diffusion models are very limited, potentially slowing down principled methodological innovations for further harnessing and improving diffusion models. In this paper, we review emerging applications of diffusion models to highlight their sample generation capabilities under various control goals. At the same time, we dive into the unique working flow of diffusion models through the lens of stochastic processes. We identify theoretical challenges in analyzing diffusion models, owing to their complicated training procedure and interaction with the underlying data distribution. To address these challenges, we overview several promising advances, demonstrating diffusion models as an efficient distribution learner and a sampler. Furthermore, we introduce a new avenue in high-dimensional structured optimization through diffusion models, where searching for solutions is reformulated as a conditional sampling problem and solved by diffusion models. Lastly, we discuss future directions about diffusion models. The purpose of this paper is to provide a well-rounded exposure for stimulating forward-looking theories and methods of diffusion models.
Fossil evidence for silica biomineralization in Permian lycophytes
Feng Z, Sui Q, Wei HB and Chen J
This paper reports the first in-situ fossil evidence for silica biomineralisation in Permian plants. The discovery reinforces the significant role that land plants have played in influencing the evolution of Earth systems in deep time.
Understanding the interfacial water structure in electrocatalysis
Shi G, Lu T and Zhang L
The structure of interfacial water molecules plays a crucial role in modulating the electrochemical surface kinetics. This article provides an in-depth understanding of the water molecule structure inside the double layer and its main influencing factors at the molecular scale.
Unveiling the interfacial liquid in electrochemical reactions
Nicolas J, Baidoun R and Kim D
Adapting novel experimental techniques to address key knowledge gaps about the structure and properties of the interfacial liquid (IL) will enhance our understanding of its influence on electrochemical reactions, particularly in mediating species transport, charge transfer, and intermediate stability.
Foundation model for comprehensive transcriptional regulation analysis
Yu Z and Zhang Y
General-purpose pre-trained large cellular models for single-cell transcriptomics
Bian H, Chen Y, Luo E, Wu X, Hao M, Wei L and Zhang X
Origin of sulfate in post-snowball-Earth oceans: river inputs vs. shelf-derived HS
Bao H, Peng Y and Cao X
A synthesis of global barite sulfate isotope data from approximately 635 million years ago, at the end of a global glaciation, undermines the hypothesis that river sulfate was the primary carrier of the distinctive 17O-depleted atmospheric O2 signature of the time. Instead, an aqueous H2S oxidation model on the shelf emerges as a compelling alternative, though it demands extensive validation across multiple fronts by the scientific community.
Contribution of irrigation to the production of maize, wheat, and rice in the major global producing countries
Ai Z, Boulange J, Zhao X, Li F, Mahmood R, Manevski K, Yang Y and Yu G
This study offers new insights into the heterogeneity behind the widely accepted notion that irrigated crops contribute 40% to global food production. It also highlights the potential of irrigation to mitigate the negative effects of climate change on crop yields.
Revolutionizing biomolecular structure determination with artificial intelligence
Li H, Lei Y and Zeng J
Insights into chemoautotrophic traits of a prevalent bacterial phylum CSP1-3, herein
Liu L, Lian ZH, Lv AP, Salam N, Zhang JC, Li MM, Sun WM, Tan S, Luo ZH, Gao L, Yuan Y, Ming YZ, OuYang YT, Li YX, Liu ZT, Hu CJ, Chen Y, Hua ZS, Shu WS, Hedlund BP, Li WJ and Jiao JY
Candidate bacterial phylum CSP1-3 has not been cultivated and is poorly understood. Here, we analyzed 112 CSP1-3 metagenome-assembled genomes and showed they are likely facultative anaerobes, with 3 of 5 families encoding autotrophy through the reductive glycine pathway (RGP), Wood-Ljungdahl pathway (WLP) or Calvin-Benson-Bassham (CBB), with hydrogen or sulfide as electron donors. Chemoautotrophic enrichments from hot spring sediments and fluorescence hybridization revealed enrichment of six CSP1-3 genera, and both transcribed genes and DNA-stable isotope probing were consistent with proposed chemoautotrophic metabolisms. Ancestral state reconstructions showed that the ancestors of phylum CSP1-3 may have been acetogens that were autotrophic via the RGP, whereas the WLP and CBB were acquired by horizontal gene transfer. Our results reveal that CSP1-3 is a widely distributed phylum with the potential to contribute to the cycling of carbon, sulfur and nitrogen. The name phy. nov. is proposed.
Ultraslow spreading ridges: slowest but locally thickest
Liu CZ and Zhu RX
The breakthrough of oxide pathway mechanism in stability and scaling relationship for water oxidation
Yin ZH, Liu H, Hu JS and Wang JJ
An in-depth understanding of electrocatalytic mechanisms is essential for advancing electrocatalysts for the oxygen evolution reaction (OER). The emerging oxide pathway mechanism (OPM) streamlines direct O-O radical coupling, circumventing the formation of oxygen vacancy defects featured in the lattice oxygen mechanism (LOM) and bypassing additional reaction intermediates (*OOH) inherent to the adsorbate evolution mechanism (AEM). With only *O and *OH as intermediates, OPM-driven electrocatalysts stand out for their ability to disrupt traditional scaling relationships while ensuring stability. This review compiles the latest significant advances in OPM-based electrocatalysis, detailing design principles, synthetic methods, and sophisticated techniques to identify active sites and pathways. We conclude with prospective challenges and opportunities for OPM-driven electrocatalysts, aiming to advance the field into a new era by overcoming traditional constraints.
Chemical synthesis-based structure correction of a claimed protein-free antifreeze oligosaccharide
Crich D
Artificial intelligence-guided strategies for next-generation biological sequence design
Zhang P, Wei L, Li J and Wang X
Deep-learning based representation and recognition for genome variants-from SNVs to structural variants
Wang S and Ye K
Exploring the frontier of microbiome biomarker discovery with artificial intelligence
Xiao L and Zhao F
Deciphering decadal urban ozone trends from historical records since 1980
Wang H, Lu X, Palmer PI, Zhang L, Lu K, Li K, Nagashima T, Koo JH, Tanimoto H, Wang H, Gao M, He C, Wu K, Fan S and Zhang Y
Ozone pollution is a major environmental threat to human health. Timely assessment of ozone trends is crucial for informing environmental policy. Here we show that for the most recent decade (2013-2022) in the northern hemisphere, warm-season (April-September) mean daily 8-h average maximum ozone increases much faster in urban regions with top ozone levels (mainly in the North China Plain, 1.2 ± 1.3 ppbv year) than in other, low-ozone regions (0.2 ± 0.9 ppbv year). These trends widen the ozone differences across urban regions, and increase extreme pollution levels and health threats from a global perspective. Comparison of historical trends in different urban regions reveals that ozone increases in China during 2013-2022 differ in magnitude and mechanisms to historical periods in other regions since 1980. This reflects a unique chemical environment characterized by exceptionally high nitrogen oxides and aerosol concentrations, where reducing ozone precursor emissions leads to substantial ozone increase. Ozone increase in China has slowed down in 2018-2022 compared to 2013-2017, driven by ongoing emission reductions, but with ozone-favorable weather conditions. Historical ozone evolution in Japan and South Korea indicates that ozone increases should be suppressed with continuous emission reduction. Increasing temperature and associated wildfires have also reversed ozone decreases in the USA and Europe, with anthropogenic ozone control slowing down in recent decades.
Artificial intelligence and biological research
Wu CI and Li C