Analysis of Biophysical Variables in an Onion Crop ( L.) with Nitrogen Fertilization by Sentinel-2 Observations
The production of onions bulbs ( L.) requires a high amount of nitrogen. According to the demand of sustainable agriculture, the information-development and communication technologies allow for improving the efficiency of nitrogen fertilization. In the south of the province of Buenos Aires, Argentina, between 8000 and 10,000 hectares per year are cultivated in the districts of Villarino and Patagones. This work aimed to analyze the relationship of biophysical variables: leaf area index (LAI), canopy chlorophyll content (CCC), and canopy cover factor (fCOVER), with the nitrogen fertilization of an intermediate cycle onion crop and its effects on yield. A field trial study with different doses of granulated urea and granulated urea was carried out, where biophysical characteristics were evaluated in the field and in Sentinel-2 satellite observations. Field data correlated well with satellite data, with an R of 0.91, 0.96, and 0.85 for LAI, fCOVER, and CCC, respectively. The application of nitrogen in all its doses produced significantly higher yields than the control. The LAI and CCC variables had a positive correlation with yield in the months of November and December. A significant difference was observed between U250 (62 Mg ha) and the other treatments. The U500 dose led to a yield increase of 27% compared to U250, while the difference between U750 and U500 was 6%.
Optimizing Gaussian Process Regression for Image Time Series Gap-Filling and Crop Monitoring
Image processing entered the era of artificial intelligence, and machine learning algorithms emerged as attractive alternatives for time series data processing. Satellite image time series processing enables crop phenology monitoring, such as the calculation of start and end of season. Among the promising algorithms, Gaussian process regression (GPR) proved to be a competitive time series gap-filling algorithm with the advantage of, as developed within a Bayesian framework, providing associated uncertainty estimates. Nevertheless, the processing of time series images becomes computationally inefficient in its standard per-pixel usage, mainly for GPR training rather than the fitting step. To mitigate this computational burden, we propose to substitute the per-pixel optimization step with the creation of a cropland-based precalculations for the GPR hyperparameters . To demonstrate our approach hardly affects the accuracy in fitting, we used Sentinel-2 LAI time series over an agricultural region in Castile and Leon, North-West Spain. The performance of image reconstructions were compared against the standard per-pixel GPR time series processing. Results showed that accuracies were on the same order (RMSE 0.1767 vs. 0.1564 [m/m], 12% RMSE degradation) whereas processing time accelerated about 90 times. We further evaluated the alternative option of using the same hyperparameters for all the pixels within the complete scene. It led to similar overall accuracies over crop areas and computational performance. Crop phenology indicators were also calculated for the three different approaches and compared. Results showed analogous crop temporal patterns, with differences in start and end of growing season of no more than five days. To the benefit of crop monitoring applications, all the gap-filling and phenology indicators retrieval techniques have been implemented into the freely downloadable GUI toolbox DATimeS.
Species Trigger Cultivar-Specific Responses to Wilt in Tomato
The endophytic fungi and have recently gained increasing attention due to their beneficial effects on plant growth and plant health. Little is known about other species, such as and . To test their biocontrol and growth-promoting potential, susceptible and tolerant tomato cultivars (Kremser Perle and Micro-Tom, respectively) were inoculated with , or and challenged with the soilborne pathogen f. sp. () in greenhouse experiments. Furthermore, in vitro assays on the direct inhibitory effects of spp. against were performed. Negative effects of on phenological growth in the susceptible cultivar were alleviated by all four applied spp. Apart from these similar effects on biometric parameters, disease incidence was only reduced by and . In the tolerant cultivar, disease parameters remained unaffected although shoot dry mass was negatively affected by . Direct effects of spp. against were not evident in the in vitro assays indicating an indirect effect via the host plant. Our results highlight the importance of identifying cultivar-specific effects in pathogen-endophyte-plant interactions to determine the most beneficial combinations.
Diallel Analysis of Early Leaf Spot ( Hori) Disease Resistance in Groundnut
Early leaf spot (ELS) is one of the major biotic constraints of groundnut production in West and Central Africa. A study using 6 × 6 F2 full diallel populations from six parents (NAMA, B188, PC79-79, QH243C, TS32-1, and CN94C) was conducted to assess the mode of inheritance of ELS resistance traits. The F2 and parents were grown in a randomized complete block design with three replications. Data was collected on ELS disease severity, and an area under disease progress curve (AUDPC) was estimated. The results revealed that additive and non-additive gene actions were involved in the inheritance of the ELS resistance traits, but additive gene action was predominant. Significant reciprocal cross effect was observed, suggesting cytoplasmic effect on ELS resistance. Graphical analysis also revealed the predominance of additive gene action for ELS resistance. The results suggest that early generation selection should be effective for ELS resistance. Looking at the distribution of array points along with the regression line, parental lines NAMA, PC79-79, and B188 would be suitable as good donors in an ELS disease resistance breeding program.
Performance Assessment of Drought Tolerant Maize Hybrids under Combined Drought and Heat Stress
Drought and high temperature are two major factors limiting maize productivity in sub-Saharan Africa. An increase in temperature above 30 C reduces yield by 1% under optimal rain-fed condition and by 1.7% under drought stress (DS) and up to 40% under combined drought and heat stress (DSHTS). Approaches that improve performance under the two stresses are essential to sustain productivity. The objectives of this study were to (i) assess the extent of variation in tolerance to DSHTS from among the existing best drought tolerant (DT) hybrids; (ii) examine the response patterns of the hybrids to DSHTS; (iii) identify traits that contributed to better performance under DSHTS; and (iv) select the best hybrids with tolerance to DSHTS stress. We evaluated 40 DT hybrids under DSHTS, DS, and well-watered (WW) conditions for three years. Highly significant ( < 0.001) differences were found among hybrids for grain yield and other traits. Moderately to low repeatability values were detected for grain yield under DS (0.63) and under DSHTS (0.48). Grain yield under DS was not correlated with grain yield under DSHTS ( = 0.29; = 0.06), but it was correlated with grain yield under WW ( = 0.74; < 0.001). Grain yield was strongly correlated with ears per plant, ear and pant aspects, days to anthesis and silking under both DS and DSHTS. Tassel blast accounted for 28% of the yield reduction under DSHTS. The top five DT hybrids produced 9 to 26% more grain yields than the best commercial hybrid. Three hybrids produced high grain yields under DTHTS and DS as well as under WW. These hybrids will be tested further in collaboration with partners for possible release.
Molecular Characterizations of Kenyan Brachiaria Grass Ecotypes with Microsatellite (SSR) Markers
Brachiaria grass is an emerging forage option for livestock production in Kenya. Kenya lies within the center of diversity for species, thus a high genetic variation in natural populations of is expected. Overgrazing and clearing of natural vegetation for crop production and nonagricultural uses and climate change continue to threaten the natural biodiversity. In this study, we collected 79 ecotypes from different parts of Kenya and examined them for genetic variations and their relatedness with 8 commercial varieties. A total of 120 different alleles were detected by 22 markers in the 79 ecotypes. Markers were highly informative in differentiating ecotypes with average diversity and polymorphic information content of 0.623 and 0.583, respectively. Five subpopulations: International Livestock Research Institute (ILRI), Kitui, Kisii, Alupe, and Kiminini differed in sample size, number of alleles, number of private alleles, diversity index, and percentage polymorphic loci. The contribution of within-the-individual difference to total genetic variation of Kenyan ecotype population was 81%, and the fixation index ( = 0.021) and number of migrant per generation (m = 11.58) showed low genetic differentiation among the populations. The genetic distance was highest between Alupe and Kisii populations (0.510) and the lowest between ILRI and Kiminini populations (0.307). The unweighted neighbor-joining (NJ) tree showed test ecotypes grouped into three major clusters: ILRI ecotypes were present in all clusters; Kisii and Alupe ecotypes and improved varieties grouped in clusters I and II; and ecotypes from Kitui and Kiminini grouped in cluster I. This study confirms higher genetic diversity in Kenyan ecotypes than eight commercial varieties (Basilisk, Humidicola, Llanero, Marandú, MG4, Mulato II, Piatá and Xaraés) that represent three species and one three-way cross-hybrid Mulato II. There is a need for further collection of local ecotypes and their morphological, agronomical, and genetic characterizations to support Brachiaria grass breeding and conservation programs.
Geographic and Research Center Origins of Rice Resistance to Asian Planthoppers and Leafhoppers: Implications for Rice Breeding and Gene Deployment
This study examines aspects of virulence to resistant rice varieties among planthoppers and leafhoppers. Using a series of resistant varieties, brown planthopper, , virulence was assessed in seedlings and early-tillering plants at seven research centers in South and East Asia. Virulence of the whitebacked planthopper, , in Taiwan and the Philippines was also assessed. Phylogenetic analysis of the varieties using single-nucleotide polymorphisms (SNPs) indicated a clade of highly resistant varieties from South Asia with two further South Asian clades of moderate resistance. Greenhouse bioassays indicated that planthoppers can develop virulence against multiple resistance genes including genes introgressed from wild rice species. populations from Punjab (India) and the Mekong Delta (Vietnam) were highly virulent to a range of key resistance donors irrespective of variety origin. populations were less virulent to donors than ; however, several genes for resistance to are now ineffective in East Asia. A clade of International Rice Research Institute (IRRI)-bred varieties and breeding lines, without identified leafhopper-resistance genes, were highly resistant to the green leafhopper, . Routine phenotyping during breeding programs likely maintains high levels of quantitative resistance to leafhoppers. We discuss these results in the light of breeding and deploying resistant rice in Asia.