Circulation-Genomic and Precision Medicine

Clinical Utility of Protein Language Models in Resolution of Variants of Uncertain Significance in , and Compared With Patch-Clamp Functional Characterization
Ye D, Garmany R, Martinez-Barrios E, Gao X, Neves RAL, Tester DJ, Bains S, Zhou W, Giudicessi JR and Ackerman MJ
Genetic testing for cardiac channelopathies is the standard of care. However, many rare genetic variants remain classified as variants of uncertain significance (VUS) due to lack of epidemiological and functional data. Whether deep protein language models may aid in VUS resolution remains unknown. Here, we set out to compare how 2 deep protein language models perform at VUS resolution in the 3 most common long-QT syndrome-causative genes compared with the gold-standard patch clamp.
Cardiovascular Disease Pathogenicity Predictor (CVD-PP): A Tissue-Specific In Silico Tool for Discriminating Pathogenicity of Variants of Unknown Significance in Cardiovascular Disease Genes
Ramaker ME, Abdulrahim JW, Corey KM, Ramaker RC, Kwee LC, Kraus WE and Shah SH
Interpretation of variants of uncertain significance (VUSs) remains a challenge in the care of patients with inherited cardiovascular diseases (CVDs); 56% of variants within CVD risk genes are VUS, and machine learning algorithms trained upon large data resources can stratify VUS into higher versus lower probability of contributing to a CVD phenotype.
Circulating Blood Plasma Profiling Reveals Proteomic Signature and a Causal Role for SVEP1 in Sudden Cardiac Death
Duong T, Austin TR, Brody JA, Shojaie A, Battle A, Bader JS, Hong YS, Ballantyne CM, Coresh J, Gerszten RE, Tracy RP, Psaty BM, Sotoodehnia N and Arking DE
Proteome- and Transcriptome-Wide Genetic Analysis Identifies Biological Pathways and Candidate Drug Targets for Preeclampsia
Ardissino M, Truong B, Slob EAW, Schuermans A, Yoshiji S, Morley AP, Burgess S, Ng FS, de Marvao A, Natarajan P, Nicolaides K, Gaziano L, Butterworth A and Honigberg MC
Preeclampsia is a leading cause of maternal and perinatal morbidity and mortality. However, the current understanding of its underlying biological pathways remains limited.
Polygenic Scoring for Detection of Ascending Thoracic Aortic Dilation
DePaolo J, Biagetti G, Judy R, Wang GJ, Kelly JJ, Iyengar A, Goel NJ, Desai ND, Szeto WY, Bavaria JE, Levin MG and Damrauer SM
Ascending thoracic aortic dilation is a complex heritable trait that involves modifiable and nonmodifiable risk factors. Polygenic scores (PGS) are increasingly used to assess risk for complex diseases. The degree to which a PGS can improve aortic diameter prediction in diverse populations is unknown. Presently, we tested whether adding a PGS to clinical prediction algorithms improves performance in a diverse biobank.
Role of Calmodulin in Cardiac Disease: Insights on Genotype and Phenotype
Schwartz PJ, Crotti L, Nyegaard M and Overgaard MT
Calmodulin, a protein critically important for the regulation of all major cardiac ion channels, is the quintessential cellular calcium sensor and plays a key role in preserving cardiac electrical stability. Its unique importance is highlighted by the presence of 3 genes in 3 different chromosomes encoding for the same protein and by their extreme conservation. Indeed, all 3 calmodulin () genes are among the most constrained genes in the human genome, that is, the observed variants are much less than expected by chance. Not surprisingly, variants are poorly tolerated and accompany significant clinical phenotypes, of which the most important are those associated with increased risk for life-threatening arrhythmias. Here, we review the current knowledge about calmodulin, its specific physiological, structural, and functional characteristics, and its importance for cardiovascular disease. Given our role in the development of this knowledge, we also share some of our views about currently unanswered questions, including the rational approaches to the clinical management of the affected patients. Specifically, we present some of the most critical information emerging from the International Calmodulinopathy Registry, which we established 10 years ago. Further progress clearly requires deep phenotypic information on as many carriers as possible through international contributions to the registry, in order to expand our knowledge about Calmodulinopathies and guide clinical management.
Polygenic Risk in Families With Dilated Cardiomyopathy
Thompson JM, Johnson R, Troup M, Rath EM, Young PE, Soka MJ, Ohanian M, Tarr IS, Giannoulatou E and Fatkin D
Exercise Intolerance and Low Cardiac Filling Pressures in a Woman With a Novel eNOS Mutation
McGarrity S, Ziehr DR, Austin-Tse CA, Wein MN, Chivukula RR and Oldham WM
Common Genetic Variant Associated With Atrial Fibrillation Lowers Expression of Nesprin-2α1 With Downstream Effects on Nuclear and Electrophysiological Traits
Liu N, Hsu J, Mahajan G, Sun H, Laurita KR, Naga Prasad SV, Barnard J, Van Wagoner DR, Kothapalli CR, Chung MK and Smith JD
Atrial fibrillation GWAS (genome-wide association studies) identified significant associations for rs1152591 and linked variants in the gene encoding Nesprin-2, which connects the nuclear membrane with the cytoskeleton.
Polygenic Risk and Coronary Artery Disease Severity
Sherafati A, Norland K, Naderian M, Schaid DJ and Kullo IJ
Coronary atherosclerotic burden and adverse coronary heart disease events are related phenotypes with likely shared genetic cause.
How Normal Is Low-Normal Left Ventricular Ejection Fraction in Familial Dilated Cardiomyopathy?
Peters SA, Wright L, Fogarty SJ, McCall L, Rosa M, Joshi SB, Lui E, Zentner D, Marwick T and Fatkin D
Yield of Genetic Testing for Long-QT Syndrome in Elderly Patients With Torsades de Pointes
Tomidokoro D, Nakamura T, Oka S, Miyazaki Y, Wakamiya A, Ueda N, Nakajima K, Kamakura T, Wada M, Ishibashi K, Inoue Y, Miyamoto K, Nagase S, Kitada S, Sakaue Y, Shiraishi H, Kabutoya T, Takami K, Miyoshi M, Takahashi N, Soeki T, Hiroi Y, Asano Y, Ohno S, Kusano K and Aiba T
Invasive Assessment of Coronary Artery Disease in Clonal Hematopoiesis of Indeterminate Potential
Heimlich JB, Raddatz MA, Wells J, Vlasschaert C, Olson S, Threadcraft M, Foster K, Boateng E, Umbarger K, Su YR, Roden DM, Barker CM and Bick AG
Clonal hematopoiesis of indeterminate potential (CHIP) occurs due to acquired mutations in bone marrow progenitor cells. CHIP confers a 2-fold risk of atherosclerotic cardiovascular disease. However, there are limited data regarding specific cardiovascular phenotypes. The purpose of this study was to define the coronary artery disease phenotype of the CHIP population-based on coronary angiography.
Rapidly Progressive Peripheral Artery Disease: Importance of Oligogenic Inheritance and Functional Validation
Dangreau L, Nitschke Y, Rutsch F and Vanakker OM
Admixture Mapping of Chronic Kidney Disease and Risk Factors in Hispanic/Latino Individuals From Central America Country of Origin
Horimoto ARVR, Sun Q, Lash JP, Daviglus ML, Cai J, Haack K, Cole SA, Thornton TA, Browning SR and Franceschini N
Chronic kidney disease (CKD) is highly prevalent in Central America, and genetic factors may contribute to CKD risk. To understand the influences of genetic admixture on CKD susceptibility, we conducted an admixture mapping screening of CKD traits and risk factors in US Hispanic and Latino individuals from Central America country of origin.
Circulating Metabolite Profiles and Risk of Coronary Heart Disease Among Racially and Geographically Diverse Populations
Deng K, Gupta DK, Shu XO, Lipworth L, Zheng W, Cai H, Cai Q and Yu D
Metabolomics may reveal novel biomarkers for coronary heart disease (CHD). We aimed to identify circulating metabolites and construct a metabolite risk score (MRS) associated with incident CHD among racially and geographically diverse populations.
Multisite Validation of a Functional Assay to Adjudicate Brugada Syndrome-Associated Variants
Ma JG, O'Neill MJ, Richardson E, Thomson KL, Ingles J, Muhammad A, Solus JF, Davogustto G, Anderson KC, Shoemaker MB, Stergachis AB, Floyd BJ, Dunn K, Parikh VN, Chubb H, Perrin MJ, Roden DM, Vandenberg JI, Ng CA and Glazer AM
Brugada syndrome is an inheritable arrhythmia condition that is associated with rare, loss-of-function variants in . Interpreting the pathogenicity of missense variants is challenging, and ≈79% of missense variants in ClinVar are currently classified as variants of uncertain significance. Automated patch clamp technology enables high-throughput functional studies of ion channel variants and can provide evidence for variant reclassification.
Rare Variant in Associated With Familial Supraventricular Tachycardia and Wolff-Parkinson-White Syndrome
Potter AS, Miyake CY, Gonzaga-Jauregui C, Aguilar-Sanchez Y, Hulsurkar MM, Lahiri SK, Moreira LM, Mehta N, Azamian MS, Lupski JR, Reilly S, Lalani SR and Wehrens XHT
Accessory pathways are a common cause of supraventricular tachycardia (SVT) and can lead to sudden cardiac death in otherwise healthy children and adults when associated with Wolff-Parkinson-White syndrome. The goal of this study was to identify genetic variants within a large family with structurally normal hearts affected by SVT and Wolff-Parkinson-White syndrome and determine causality of the gene deficit in a corresponding mouse model.
Loss of Function Variant in Is Associated With a Novel Phenotype of Internal Carotid Artery Dissection
Alghamdi MA, Alqarawi W, Alharbi E, Balahmar RM, Alruqi H, Jadu N, Alhomidan M, Alghamdi MH and Almontashiri NAM
Prediction of Positive Genetic Testing for Arrhythmogenic Left Ventricular Cardiomyopathy
Ed Demri Y, Billon C, El Hachmi M, Dembélé M, Hagège A, Richard P, Ader F, Khraiche D, Bonnet D, Jeunemaitre X and Wahbi K
High-Risk Nonclassical Long-QT Syndrome Genotypes: Spectrum of Genetic and Phenotypic Features
Abdulrahman A, Davies B, Khan H, Sanatani S, Tadros R, Talajic M, Cadrin-Tourigny J, Atallah J, Lee D, Gardner M, Steinberg C, Hansom S, Green M, Fournier A, Arbour L, Leather R, Kimber S, Roberts J, Healey J, Angaran P, Simpson C, Seifer C, Ilhan E, Joza J, Krahn A and Laksman Z